Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20972
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)                      30   1.6  
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)           29   2.8  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   4.8  
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 921

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 322 GWCCKPTNKSRH---RGSCETRRR*HSCDSQLRGHDSNSRWNAGWPTSKNTCI*DIDSKI 492
           GW  K TNK+ +   R +  T    H C   LR +D N    AG+ TS  TCI D  S +
Sbjct: 802 GWG-KTTNKTVYTDLRQANVTLVHRHRCSWALRNYDGNRLLCAGFLTSDVTCISDSGSPL 860


>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
          Length = 605

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = -3

Query: 151 ALPASLTGILPALNF-TGTAPLPPVFTCT*----RGVPAPPEADPNTICAP 14
           A P +L  + P   F TG  P PP+         R  P  P+ADPN + +P
Sbjct: 488 ARPQALQNVYPPQRFETGFVPRPPIPMAPQAPYYRNYPFNPQADPNPVGSP 538


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 142 ASLTGILPALNFTGTAPLPPVFTCT*RGVPAPPEADPNTICAPDCAV 2
           AS +G+   +     AP P VF  +  GVP P  A P ++ AP   V
Sbjct: 445 ASSSGVPTPVTAPPPAPPPSVFAPS-SGVPTPVAAPPPSVFAPSSGV 490



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = -3

Query: 187 P*MLVVPIFSGTALPASLTGILPALNFTGTAPLP-----PVFTCT*RGVPAPPEADPNTI 23
           P   V P  +  A P+S+    PA+    TAP P     P    +  GVP P +A P ++
Sbjct: 326 PSSTVTPPVTEPAPPSSVVAPPPAVPTPATAPPPVVAPPPSVFASSSGVPTPVKAPPPSV 385

Query: 22  CAPDCAV 2
            A    V
Sbjct: 386 FASSSGV 392



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 142 ASLTGILPALNFTGTAPLPPVFTCT*RGVPAPPEADPNTICAPDCAV 2
           AS +G+   +     AP P VF  +  GVP P  A P ++ AP   V
Sbjct: 387 ASSSGVPTPVAAPPPAPPPSVFAPS-SGVPTPVAAPPPSVFAPSSGV 432


>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 295 KNSRRNALTGWCCKPTNKSR 354
           K  RR+A   W CKPT+K R
Sbjct: 140 KAIRRDARINWICKPTHKHR 159


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +1

Query: 355  HRGSCETRRR*H----SCDSQLRGHDSNSRWNAGWP 450
            H   C+ R R H     CD++ RGH    R    WP
Sbjct: 1264 HNTKCDARYRGHRDKTKCDARYRGHRDKVRCALPWP 1299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,430,340
Number of Sequences: 59808
Number of extensions: 497868
Number of successful extensions: 1330
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)