BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20972 (702 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 30 1.6 SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) 29 2.8 SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 29 4.8 SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 >SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) Length = 921 Score = 30.3 bits (65), Expect = 1.6 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = +1 Query: 322 GWCCKPTNKSRH---RGSCETRRR*HSCDSQLRGHDSNSRWNAGWPTSKNTCI*DIDSKI 492 GW K TNK+ + R + T H C LR +D N AG+ TS TCI D S + Sbjct: 802 GWG-KTTNKTVYTDLRQANVTLVHRHRCSWALRNYDGNRLLCAGFLTSDVTCISDSGSPL 860 >SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) Length = 605 Score = 29.5 bits (63), Expect = 2.8 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Frame = -3 Query: 151 ALPASLTGILPALNF-TGTAPLPPVFTCT*----RGVPAPPEADPNTICAP 14 A P +L + P F TG P PP+ R P P+ADPN + +P Sbjct: 488 ARPQALQNVYPPQRFETGFVPRPPIPMAPQAPYYRNYPFNPQADPNPVGSP 538 >SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) Length = 1439 Score = 28.7 bits (61), Expect = 4.8 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -3 Query: 142 ASLTGILPALNFTGTAPLPPVFTCT*RGVPAPPEADPNTICAPDCAV 2 AS +G+ + AP P VF + GVP P A P ++ AP V Sbjct: 445 ASSSGVPTPVTAPPPAPPPSVFAPS-SGVPTPVAAPPPSVFAPSSGV 490 Score = 27.9 bits (59), Expect = 8.4 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Frame = -3 Query: 187 P*MLVVPIFSGTALPASLTGILPALNFTGTAPLP-----PVFTCT*RGVPAPPEADPNTI 23 P V P + A P+S+ PA+ TAP P P + GVP P +A P ++ Sbjct: 326 PSSTVTPPVTEPAPPSSVVAPPPAVPTPATAPPPVVAPPPSVFASSSGVPTPVKAPPPSV 385 Query: 22 CAPDCAV 2 A V Sbjct: 386 FASSSGV 392 Score = 27.9 bits (59), Expect = 8.4 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -3 Query: 142 ASLTGILPALNFTGTAPLPPVFTCT*RGVPAPPEADPNTICAPDCAV 2 AS +G+ + AP P VF + GVP P A P ++ AP V Sbjct: 387 ASSSGVPTPVAAPPPAPPPSVFAPS-SGVPTPVAAPPPSVFAPSSGV 432 >SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 204 Score = 27.9 bits (59), Expect = 8.4 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +1 Query: 295 KNSRRNALTGWCCKPTNKSR 354 K RR+A W CKPT+K R Sbjct: 140 KAIRRDARINWICKPTHKHR 159 >SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1516 Score = 27.9 bits (59), Expect = 8.4 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 4/36 (11%) Frame = +1 Query: 355 HRGSCETRRR*H----SCDSQLRGHDSNSRWNAGWP 450 H C+ R R H CD++ RGH R WP Sbjct: 1264 HNTKCDARYRGHRDKTKCDARYRGHRDKVRCALPWP 1299 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,430,340 Number of Sequences: 59808 Number of extensions: 497868 Number of successful extensions: 1330 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1321 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1841633001 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -