Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20972
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    31   0.80 
AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical...    31   0.80 
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical p...    28   5.6  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    28   7.4  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL110498-3|CAB54470.1|  846|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
 Frame = -3

Query: 235 PAVTCPTFCTLLGVNFP*MLV----VPIFSGTALPASLTGILPALNFTGTAPLPPVFTCT 68
           PAV   + C       P M+     +P ++   LPA     LPA  F   AP  PVF   
Sbjct: 36  PAVCQASVCIPTAAAPPMMMAPPAPLPAYAPAPLPAYAPAPLPAPVFAAPAP-APVFAAP 94

Query: 67  *RGVPAPP-EADPNTICAPDC 8
               PAP   A P   CA  C
Sbjct: 95  FAAPPAPVIAAQPALGCAAPC 115


>AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical
           protein F41E6.12 protein.
          Length = 304

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -1

Query: 408 ELAITGMLPAPSFTGTPVATFVCRFATPPCKGIPPAVFTRTLLVPILTLPAQVS--RVDF 235
           EL   G   + S T   VA+ V     PP   +PP+  T T   P  T P + S   VDF
Sbjct: 36  ELDFCGGSASASGTPVQVASSVVPLILPPMTTLPPSTTTSTTAEPTTTTPLKSSTDSVDF 95

Query: 234 QQ 229
            +
Sbjct: 96  DE 97


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/68 (30%), Positives = 26/68 (38%)
 Frame = +2

Query: 188 KIDSQQCAESRTSHCWKSTLETCAGNVKIGTSNVLVKTAGGMPLQGGVANLQTKVATGVP 367
           KID      S+T    K+  ETC  N+        V  A    L GGV      + T V 
Sbjct: 131 KIDVTSTTTSKTERITKAAFETCKNNLASPADKTAVVYAEITSLFGGVPFFGEPLKTNVD 190

Query: 368 VKLGAGNI 391
             + AG I
Sbjct: 191 YWMVAGQI 198


>Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical
           protein K07F5.4b protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 503 FDHLILLSISYIQVFLLVGQPAFHLLFESCPLSWLSQECYRR 378
           FD ++ ++   +   L   Q AF    +  PL+WL+ EC +R
Sbjct: 249 FDGIVKIADFGLSKTLEKDQKAFKEALKEAPLAWLAPECIQR 290


>Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical
           protein K07F5.4a protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 503 FDHLILLSISYIQVFLLVGQPAFHLLFESCPLSWLSQECYRR 378
           FD ++ ++   +   L   Q AF    +  PL+WL+ EC +R
Sbjct: 292 FDGIVKIADFGLSKTLEKDQKAFKEALKEAPLAWLAPECIQR 333


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = -3

Query: 169 PIFSGTALPASLTGILPALNFTGTAPLPPVFTCT*RGVPAPPE----ADPNTICAPDCA 5
           P+      P + T       F+ T PLPP  +   + +P PP+      P T  AP  A
Sbjct: 229 PLVDKVNKPPAATNFPDPSQFSSTVPLPPAPSSLIQNLPPPPQPAFLPQPPTSYAPPVA 287


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 265 CQDWYE*CSCKNSRRNALTGWCCKPTN 345
           C D Y   SC++  +N L G+CC   N
Sbjct: 849 CSDGY---SCQSRSKNVLQGFCCSARN 872


>AL110498-3|CAB54470.1|  846|Caenorhabditis elegans Hypothetical
           protein Y64G10A.6 protein.
          Length = 846

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 301 CFYKNITRTNLDITGTSFKGRFPAVTCPTFCTLLGVNFP*MLV-VPIFSGTALPASLTGI 125
           CF  N+T+T++D  G S + RF + T   F    G N+   +V +P+    A   S T +
Sbjct: 182 CFVFNVTQTHVDDEGISPRYRFSSNTLFDF----GHNYTVTIVSLPMSRKRAPKVSATSL 237

Query: 124 LP 119
           +P
Sbjct: 238 MP 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,420,656
Number of Sequences: 27780
Number of extensions: 369910
Number of successful extensions: 1098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)