SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20972
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ...    29   3.0  
At3g28840.1 68416.m03598 expressed protein                             29   3.0  
At3g08020.1 68416.m00979 PHD finger protein-related contains low...    29   3.0  
At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to a...    29   3.9  
At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containi...    29   3.9  
At5g25930.1 68418.m03081 leucine-rich repeat family protein / pr...    28   5.2  
At4g10550.1 68417.m01727 subtilase family protein contains simil...    28   5.2  
At1g61080.1 68414.m06877 proline-rich family protein                   28   6.9  
At4g38090.2 68417.m05380 expressed protein contains Pfam PF01205...    27   9.1  
At4g38090.1 68417.m05379 expressed protein contains Pfam PF01205...    27   9.1  
At4g30510.2 68417.m04332 transport protein-related weak similari...    27   9.1  
At4g30510.1 68417.m04331 transport protein-related weak similari...    27   9.1  
At1g66210.1 68414.m07515 subtilase family protein contains simil...    27   9.1  

>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
           similar to SP|Q01205 Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial precursor (EC
           2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
           PF00198: 2-oxo acid dehydrogenases acyltransferase
           (catalytic domain), PF00364: Biotin-requiring enzyme
          Length = 464

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +2

Query: 263 NVKIGTSNVLVKTAGGMPLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGTL 442
           ++ +GTS  LV        +   A+++ K   G+  K   G I +   +GG+  ++ G +
Sbjct: 329 SIAVGTSKGLVVPVIRDADKMNFADIE-KTINGLAKKATEGTISIDEMAGGSFTVSNGGV 387

Query: 443 AGQQVKTPV 469
            G  + TP+
Sbjct: 388 YGSLISTPI 396


>At3g28840.1 68416.m03598 expressed protein 
          Length = 391

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +2

Query: 302 AGGMPLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGTLAG 448
           AGG    GG        A G     GAG     A++GG      GT AG
Sbjct: 227 AGGTTATGGTTAAGGSTAAGGTTASGAGTAGYGATAGGATASGAGTAAG 275


>At3g08020.1 68416.m00979 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 764

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 325 WCCKPTNKSRHRGS--CETRRR*HSCDSQLRGHDSNSRW 435
           +C  P +K+   G   C    R HSCDS + G+  + RW
Sbjct: 228 YCQHPPHKNVSSGPYLCPKHTRCHSCDSTVPGNGLSVRW 266


>At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to
           alpha-expansin 4 precursor GI:16923355 from [Cucumis
           sativus]; alpha-expansin gene family, PMID:11641069
          Length = 263

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 45  GGAGTPRYVQVKTGGSGAVPVKLSAG---NMPVKLAGNAVPLKIGTTN 179
           GGAG  +YVQVK   +G + +K + G        L G  +  ++ TT+
Sbjct: 190 GGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTD 237


>At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 453

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +3

Query: 60  PRYVQVKTGGSGAVPVKLSAGNMPVKLAGNAVPLKIGTTNIQGKLTPNSVQKVGQVTAGN 239
           PR VQ   GG GA  +  + GN  + + G  V + +       K     VQ     T   
Sbjct: 220 PRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWE-NKKEEEQMVQITRDETLSR 278

Query: 240 LPLKL 254
           LPL+L
Sbjct: 279 LPLRL 283


>At5g25930.1 68418.m03081 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           Swiss-Prot:P47735 receptor-like protein kinase 5
           precursor [Arabidopsis thaliana]; contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1005

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 310 SACCFYKNITRTNLDITGTSFKGR-FPAVTCPTFCTLLGVNF 188
           S+ C +  IT T  ++TG +FK + F      T C L  +NF
Sbjct: 50  SSPCNWSEITCTAGNVTGINFKNQNFTGTVPTTICDLSNLNF 91


>At4g10550.1 68417.m01727 subtilase family protein contains
           similarity to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana]
          Length = 778

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 384 PAPSFTGTPVATFVCRFATPPCKGIPPAVFTRTLLVPILTLPAQVSRVDF-QQ*LVLLS 211
           P+ +  G PV T V  F++     I PA+    +  P +++ A  +   F  Q  ++LS
Sbjct: 495 PSKTLVGQPVGTKVATFSSRGPNSIAPAILKPDIAAPGVSILAATTNTTFSDQGFIMLS 553


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = -3

Query: 175 VVPI--FSGTALPASLTGILPALNFTGTAPLPPVFTCT*RGVPAPPEAD--PNTICAP 14
           V+P+  F+    P     ++P  +F    P PP F       P PP     P TI AP
Sbjct: 466 VMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAP 523


>At4g38090.2 68417.m05380 expressed protein contains Pfam PF01205:
           Uncharacterized protein family UPF0029
          Length = 189

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 559 GNAGIPVIIKKTGAGAQASNTPQFVTLVKT 648
           G   IPV++  +G  + ASN+  F TL +T
Sbjct: 15  GGRRIPVLVAASGKRSMASNSGSFTTLKET 44


>At4g38090.1 68417.m05379 expressed protein contains Pfam PF01205:
           Uncharacterized protein family UPF0029
          Length = 234

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 559 GNAGIPVIIKKTGAGAQASNTPQFVTLVKT 648
           G   IPV++  +G  + ASN+  F TL +T
Sbjct: 15  GGRRIPVLVAASGKRSMASNSGSFTTLKET 44


>At4g30510.2 68417.m04332 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); similar to several hypothetical
           proteins
          Length = 261

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 595 GAGAQASNTPQFVTLVKTSTGM 660
           GAG QAS +P+ + L KT+TG+
Sbjct: 25  GAGEQASLSPRRLCLFKTTTGL 46


>At4g30510.1 68417.m04331 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); similar to several hypothetical
           proteins
          Length = 312

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 595 GAGAQASNTPQFVTLVKTSTGM 660
           GAG QAS +P+ + L KT+TG+
Sbjct: 12  GAGEQASLSPRRLCLFKTTTGL 33


>At1g66210.1 68414.m07515 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 759

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 399 ITGMLPAPSFTGTPVATFVCRFATPPCKGIPPAVFTRTLLVP 274
           I  + P  +F G P+AT V RF++     + P +    +  P
Sbjct: 477 IAKISPTKTFVGRPLATKVARFSSRGPNSLSPVILKPDIAAP 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,145
Number of Sequences: 28952
Number of extensions: 333806
Number of successful extensions: 964
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -