BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20972 (702 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ... 29 3.0 At3g28840.1 68416.m03598 expressed protein 29 3.0 At3g08020.1 68416.m00979 PHD finger protein-related contains low... 29 3.0 At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to a... 29 3.9 At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containi... 29 3.9 At5g25930.1 68418.m03081 leucine-rich repeat family protein / pr... 28 5.2 At4g10550.1 68417.m01727 subtilase family protein contains simil... 28 5.2 At1g61080.1 68414.m06877 proline-rich family protein 28 6.9 At4g38090.2 68417.m05380 expressed protein contains Pfam PF01205... 27 9.1 At4g38090.1 68417.m05379 expressed protein contains Pfam PF01205... 27 9.1 At4g30510.2 68417.m04332 transport protein-related weak similari... 27 9.1 At4g30510.1 68417.m04331 transport protein-related weak similari... 27 9.1 At1g66210.1 68414.m07515 subtilase family protein contains simil... 27 9.1 >At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein similar to SP|Q01205 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Rattus norvegicus}; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme Length = 464 Score = 29.1 bits (62), Expect = 3.0 Identities = 17/69 (24%), Positives = 33/69 (47%) Frame = +2 Query: 263 NVKIGTSNVLVKTAGGMPLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGTL 442 ++ +GTS LV + A+++ K G+ K G I + +GG+ ++ G + Sbjct: 329 SIAVGTSKGLVVPVIRDADKMNFADIE-KTINGLAKKATEGTISIDEMAGGSFTVSNGGV 387 Query: 443 AGQQVKTPV 469 G + TP+ Sbjct: 388 YGSLISTPI 396 >At3g28840.1 68416.m03598 expressed protein Length = 391 Score = 29.1 bits (62), Expect = 3.0 Identities = 17/49 (34%), Positives = 19/49 (38%) Frame = +2 Query: 302 AGGMPLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGTLAG 448 AGG GG A G GAG A++GG GT AG Sbjct: 227 AGGTTATGGTTAAGGSTAAGGTTASGAGTAGYGATAGGATASGAGTAAG 275 >At3g08020.1 68416.m00979 PHD finger protein-related contains low similarity to PHD-finger domain proteins Length = 764 Score = 29.1 bits (62), Expect = 3.0 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = +1 Query: 325 WCCKPTNKSRHRGS--CETRRR*HSCDSQLRGHDSNSRW 435 +C P +K+ G C R HSCDS + G+ + RW Sbjct: 228 YCQHPPHKNVSSGPYLCPKHTRCHSCDSTVPGNGLSVRW 266 >At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to alpha-expansin 4 precursor GI:16923355 from [Cucumis sativus]; alpha-expansin gene family, PMID:11641069 Length = 263 Score = 28.7 bits (61), Expect = 3.9 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +3 Query: 45 GGAGTPRYVQVKTGGSGAVPVKLSAG---NMPVKLAGNAVPLKIGTTN 179 GGAG +YVQVK +G + +K + G L G + ++ TT+ Sbjct: 190 GGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTD 237 >At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain Length = 453 Score = 28.7 bits (61), Expect = 3.9 Identities = 20/65 (30%), Positives = 27/65 (41%) Frame = +3 Query: 60 PRYVQVKTGGSGAVPVKLSAGNMPVKLAGNAVPLKIGTTNIQGKLTPNSVQKVGQVTAGN 239 PR VQ GG GA + + GN + + G V + + K VQ T Sbjct: 220 PRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWE-NKKEEEQMVQITRDETLSR 278 Query: 240 LPLKL 254 LPL+L Sbjct: 279 LPLRL 283 >At5g25930.1 68418.m03081 leucine-rich repeat family protein / protein kinase family protein contains similarity to Swiss-Prot:P47735 receptor-like protein kinase 5 precursor [Arabidopsis thaliana]; contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain Length = 1005 Score = 28.3 bits (60), Expect = 5.2 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -3 Query: 310 SACCFYKNITRTNLDITGTSFKGR-FPAVTCPTFCTLLGVNF 188 S+ C + IT T ++TG +FK + F T C L +NF Sbjct: 50 SSPCNWSEITCTAGNVTGINFKNQNFTGTVPTTICDLSNLNF 91 >At4g10550.1 68417.m01727 subtilase family protein contains similarity to subtilisin-like protease AIR3 GI:4218991 from [Arabidopsis thaliana] Length = 778 Score = 28.3 bits (60), Expect = 5.2 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -1 Query: 384 PAPSFTGTPVATFVCRFATPPCKGIPPAVFTRTLLVPILTLPAQVSRVDF-QQ*LVLLS 211 P+ + G PV T V F++ I PA+ + P +++ A + F Q ++LS Sbjct: 495 PSKTLVGQPVGTKVATFSSRGPNSIAPAILKPDIAAPGVSILAATTNTTFSDQGFIMLS 553 >At1g61080.1 68414.m06877 proline-rich family protein Length = 907 Score = 27.9 bits (59), Expect = 6.9 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Frame = -3 Query: 175 VVPI--FSGTALPASLTGILPALNFTGTAPLPPVFTCT*RGVPAPPEAD--PNTICAP 14 V+P+ F+ P ++P +F P PP F P PP P TI AP Sbjct: 466 VMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAP 523 >At4g38090.2 68417.m05380 expressed protein contains Pfam PF01205: Uncharacterized protein family UPF0029 Length = 189 Score = 27.5 bits (58), Expect = 9.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 559 GNAGIPVIIKKTGAGAQASNTPQFVTLVKT 648 G IPV++ +G + ASN+ F TL +T Sbjct: 15 GGRRIPVLVAASGKRSMASNSGSFTTLKET 44 >At4g38090.1 68417.m05379 expressed protein contains Pfam PF01205: Uncharacterized protein family UPF0029 Length = 234 Score = 27.5 bits (58), Expect = 9.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 559 GNAGIPVIIKKTGAGAQASNTPQFVTLVKT 648 G IPV++ +G + ASN+ F TL +T Sbjct: 15 GGRRIPVLVAASGKRSMASNSGSFTTLKET 44 >At4g30510.2 68417.m04332 transport protein-related weak similarity to Gsa12p [Pichia pastoris] GI:18307769; contains 1 WD-40 repeat (PF00400); similar to several hypothetical proteins Length = 261 Score = 27.5 bits (58), Expect = 9.1 Identities = 12/22 (54%), Positives = 17/22 (77%) Frame = +1 Query: 595 GAGAQASNTPQFVTLVKTSTGM 660 GAG QAS +P+ + L KT+TG+ Sbjct: 25 GAGEQASLSPRRLCLFKTTTGL 46 >At4g30510.1 68417.m04331 transport protein-related weak similarity to Gsa12p [Pichia pastoris] GI:18307769; contains 1 WD-40 repeat (PF00400); similar to several hypothetical proteins Length = 312 Score = 27.5 bits (58), Expect = 9.1 Identities = 12/22 (54%), Positives = 17/22 (77%) Frame = +1 Query: 595 GAGAQASNTPQFVTLVKTSTGM 660 GAG QAS +P+ + L KT+TG+ Sbjct: 12 GAGEQASLSPRRLCLFKTTTGL 33 >At1g66210.1 68414.m07515 subtilase family protein contains similarity to subtilase; SP1 GI:9957714 from [Oryza sativa] Length = 759 Score = 27.5 bits (58), Expect = 9.1 Identities = 12/42 (28%), Positives = 20/42 (47%) Frame = -1 Query: 399 ITGMLPAPSFTGTPVATFVCRFATPPCKGIPPAVFTRTLLVP 274 I + P +F G P+AT V RF++ + P + + P Sbjct: 477 IAKISPTKTFVGRPLATKVARFSSRGPNSLSPVILKPDIAAP 518 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,217,145 Number of Sequences: 28952 Number of extensions: 333806 Number of successful extensions: 964 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 917 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 962 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1506636208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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