Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20972
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ... 29 3.0
At3g28840.1 68416.m03598 expressed protein 29 3.0
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 29 3.0
At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to a... 29 3.9
At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containi... 29 3.9
At5g25930.1 68418.m03081 leucine-rich repeat family protein / pr... 28 5.2
At4g10550.1 68417.m01727 subtilase family protein contains simil... 28 5.2
At1g61080.1 68414.m06877 proline-rich family protein 28 6.9
At4g38090.2 68417.m05380 expressed protein contains Pfam PF01205... 27 9.1
At4g38090.1 68417.m05379 expressed protein contains Pfam PF01205... 27 9.1
At4g30510.2 68417.m04332 transport protein-related weak similari... 27 9.1
At4g30510.1 68417.m04331 transport protein-related weak similari... 27 9.1
At1g66210.1 68414.m07515 subtilase family protein contains simil... 27 9.1
>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
similar to SP|Q01205 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 263 NVKIGTSNVLVKTAGGMPLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGTL 442
++ +GTS LV + A+++ K G+ K G I + +GG+ ++ G +
Sbjct: 329 SIAVGTSKGLVVPVIRDADKMNFADIE-KTINGLAKKATEGTISIDEMAGGSFTVSNGGV 387
Query: 443 AGQQVKTPV 469
G + TP+
Sbjct: 388 YGSLISTPI 396
>At3g28840.1 68416.m03598 expressed protein
Length = 391
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +2
Query: 302 AGGMPLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGTLAG 448
AGG GG A G GAG A++GG GT AG
Sbjct: 227 AGGTTATGGTTAAGGSTAAGGTTASGAGTAGYGATAGGATASGAGTAAG 275
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 325 WCCKPTNKSRHRGS--CETRRR*HSCDSQLRGHDSNSRW 435
+C P +K+ G C R HSCDS + G+ + RW
Sbjct: 228 YCQHPPHKNVSSGPYLCPKHTRCHSCDSTVPGNGLSVRW 266
>At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to
alpha-expansin 4 precursor GI:16923355 from [Cucumis
sativus]; alpha-expansin gene family, PMID:11641069
Length = 263
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 45 GGAGTPRYVQVKTGGSGAVPVKLSAG---NMPVKLAGNAVPLKIGTTN 179
GGAG +YVQVK +G + +K + G L G + ++ TT+
Sbjct: 190 GGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTD 237
>At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 453
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +3
Query: 60 PRYVQVKTGGSGAVPVKLSAGNMPVKLAGNAVPLKIGTTNIQGKLTPNSVQKVGQVTAGN 239
PR VQ GG GA + + GN + + G V + + K VQ T
Sbjct: 220 PRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWE-NKKEEEQMVQITRDETLSR 278
Query: 240 LPLKL 254
LPL+L
Sbjct: 279 LPLRL 283
>At5g25930.1 68418.m03081 leucine-rich repeat family protein /
protein kinase family protein contains similarity to
Swiss-Prot:P47735 receptor-like protein kinase 5
precursor [Arabidopsis thaliana]; contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1005
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 310 SACCFYKNITRTNLDITGTSFKGR-FPAVTCPTFCTLLGVNF 188
S+ C + IT T ++TG +FK + F T C L +NF
Sbjct: 50 SSPCNWSEITCTAGNVTGINFKNQNFTGTVPTTICDLSNLNF 91
>At4g10550.1 68417.m01727 subtilase family protein contains
similarity to subtilisin-like protease AIR3 GI:4218991
from [Arabidopsis thaliana]
Length = 778
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 384 PAPSFTGTPVATFVCRFATPPCKGIPPAVFTRTLLVPILTLPAQVSRVDF-QQ*LVLLS 211
P+ + G PV T V F++ I PA+ + P +++ A + F Q ++LS
Sbjct: 495 PSKTLVGQPVGTKVATFSSRGPNSIAPAILKPDIAAPGVSILAATTNTTFSDQGFIMLS 553
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = -3
Query: 175 VVPI--FSGTALPASLTGILPALNFTGTAPLPPVFTCT*RGVPAPPEAD--PNTICAP 14
V+P+ F+ P ++P +F P PP F P PP P TI AP
Sbjct: 466 VMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAP 523
>At4g38090.2 68417.m05380 expressed protein contains Pfam PF01205:
Uncharacterized protein family UPF0029
Length = 189
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 559 GNAGIPVIIKKTGAGAQASNTPQFVTLVKT 648
G IPV++ +G + ASN+ F TL +T
Sbjct: 15 GGRRIPVLVAASGKRSMASNSGSFTTLKET 44
>At4g38090.1 68417.m05379 expressed protein contains Pfam PF01205:
Uncharacterized protein family UPF0029
Length = 234
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 559 GNAGIPVIIKKTGAGAQASNTPQFVTLVKT 648
G IPV++ +G + ASN+ F TL +T
Sbjct: 15 GGRRIPVLVAASGKRSMASNSGSFTTLKET 44
>At4g30510.2 68417.m04332 transport protein-related weak similarity
to Gsa12p [Pichia pastoris] GI:18307769; contains 1
WD-40 repeat (PF00400); similar to several hypothetical
proteins
Length = 261
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 595 GAGAQASNTPQFVTLVKTSTGM 660
GAG QAS +P+ + L KT+TG+
Sbjct: 25 GAGEQASLSPRRLCLFKTTTGL 46
>At4g30510.1 68417.m04331 transport protein-related weak similarity
to Gsa12p [Pichia pastoris] GI:18307769; contains 1
WD-40 repeat (PF00400); similar to several hypothetical
proteins
Length = 312
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 595 GAGAQASNTPQFVTLVKTSTGM 660
GAG QAS +P+ + L KT+TG+
Sbjct: 12 GAGEQASLSPRRLCLFKTTTGL 33
>At1g66210.1 68414.m07515 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 759
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -1
Query: 399 ITGMLPAPSFTGTPVATFVCRFATPPCKGIPPAVFTRTLLVP 274
I + P +F G P+AT V RF++ + P + + P
Sbjct: 477 IAKISPTKTFVGRPLATKVARFSSRGPNSLSPVILKPDIAAP 518
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,145
Number of Sequences: 28952
Number of extensions: 333806
Number of successful extensions: 964
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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