BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20971 (711 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 95 9e-21 SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 58 9e-10 SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 40 4e-04 SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 3.5 SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 4.6 SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 26 4.6 SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 8.1 SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces... 25 8.1 SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 8.1 >SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces pombe|chr 1|||Manual Length = 285 Score = 95.1 bits (226), Expect = 9e-21 Identities = 48/81 (59%), Positives = 57/81 (70%) Frame = +2 Query: 266 IVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEY 445 IVAVDLQ MA + GV +Q DIT T + I+ F ADLVV DGAPDVTGLHD+DEY Sbjct: 79 IVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADLVVSDGAPDVTGLHDLDEY 138 Query: 446 VQSQLLLAALNITTHVLKNEG 508 +Q+Q+LLAA N+ VLK G Sbjct: 139 IQAQILLAAFNLAVCVLKPGG 159 Score = 90.2 bits (214), Expect = 3e-19 Identities = 38/50 (76%), Positives = 45/50 (90%) Frame = +1 Query: 46 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 195 MG++SKDKRD YYRLAKE+GWRARSAFKLLQ+NE++N+F G R VDLCA Sbjct: 1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCA 50 Score = 89.8 bits (213), Expect = 3e-19 Identities = 39/61 (63%), Positives = 51/61 (83%) Frame = +1 Query: 511 FVAKIFRGKDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVNP 690 FVAKIFRG+DVSLLYSQL+ F+ V+ +KPRSSR SSIE+FV+CE +NPP ++ P++ P Sbjct: 161 FVAKIFRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVVCEDFNPPSNFQPDLTKP 220 Query: 691 L 693 L Sbjct: 221 L 221 Score = 27.1 bits (57), Expect = 2.6 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +3 Query: 198 PGSWSQVLTKNLRQN 242 PGSWSQVL++ L +N Sbjct: 52 PGSWSQVLSRELLKN 66 >SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 802 Score = 58.4 bits (135), Expect = 9e-10 Identities = 24/52 (46%), Positives = 39/52 (75%) Frame = +1 Query: 40 KNMGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 195 K+ KT+K + D +Y+LAKE+G+R+R+AFKL+Q+N++Y+ +DLCA Sbjct: 3 KSQKKTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCA 54 Score = 56.0 bits (129), Expect = 5e-09 Identities = 26/61 (42%), Positives = 34/61 (55%) Frame = +1 Query: 508 SFVAKIFRGKDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVN 687 +FV K+FR +D + L KQ F V +KP SSRN S E FV+C Y P+ P + Sbjct: 154 TFVTKVFRSRDYNNLLWVFKQLFNKVEATKPPSSRNVSAEIFVVCRGYKAPKKLDPRFTD 213 Query: 688 P 690 P Sbjct: 214 P 214 Score = 44.0 bits (99), Expect = 2e-05 Identities = 28/88 (31%), Positives = 45/88 (51%) Frame = +2 Query: 233 STKCCKY*DVKIVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAP 412 ++K CK + IV VDL + +P DIT + + + + KAD+V+ DGAP Sbjct: 63 ASKTCKPGSL-IVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKADVVLHDGAP 121 Query: 413 DVTGLHDIDEYVQSQLLLAALNITTHVL 496 +V D Y Q+QL+L ++ + L Sbjct: 122 NVGSAWLQDAYGQAQLVLMSMKLACEFL 149 >SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 218 Score = 39.9 bits (89), Expect = 4e-04 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +1 Query: 508 SFVAKIFRGKDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNP 657 SF+ K + G + + L + LK F+ V V KP++S S EA+ +C + P Sbjct: 169 SFICKFYMGDEDADLQNLLKSHFRFVQVMKPKASLKESREAYFVCLERKP 218 Score = 35.1 bits (77), Expect = 0.010 Identities = 12/36 (33%), Positives = 25/36 (69%) Frame = +1 Query: 58 SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFN 165 +K +D Y + +K + +R+R+A+KL+++N +Y N Sbjct: 12 AKRSKDFYRKKSKIDNFRSRAAYKLIELNSKYRFIN 47 Score = 34.3 bits (75), Expect = 0.017 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 12/100 (12%) Frame = +2 Query: 263 KIVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLK------------ADLVVCDG 406 K++ +D+Q +A GV I GDI T + E + L D V+ D Sbjct: 75 KVIGIDIQHIAPPEGVLPIYGDIRDPNTLTKLFEALRLLHEPNTNDSIDCRVVDAVISDM 134 Query: 407 APDVTGLHDIDEYVQSQLLLAALNITTHVLKNEGHLWPKY 526 TG+ D + +L +AL++ LK+ G K+ Sbjct: 135 LHKATGIRIRDHALSMELCASALHVALTFLKSNGSFICKF 174 >SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 263 Score = 26.6 bits (56), Expect = 3.5 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = -2 Query: 677 FGT*SSGGLYFSQITKASMLEFLELLGLDTVTSLKNCFNCEYSRE 543 FG G +Y S +AS FLE L + T+ SL+ EYS E Sbjct: 62 FGVVYPGIIYRSACPRASNFNFLESLHIRTIISLR---QEEYSEE 103 >SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|Schizosaccharomyces pombe|chr 2|||Manual Length = 1398 Score = 26.2 bits (55), Expect = 4.6 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = -2 Query: 617 EFLELLGLDTVTSLKNCFNCE-YSRETSFPLNILATNDLHS*AHGLLCSMQRV-ITEIGH 444 EFL+ L D +T+LK C E YS P T + S LL +++ +T H Sbjct: 928 EFLKCLNEDQITALKKCHAAEHYSLILGMP-GTGKTTTISSLIRSLLAKKKKILLTSFTH 986 Query: 443 I 441 + Sbjct: 987 L 987 >SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 396 Score = 26.2 bits (55), Expect = 4.6 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -1 Query: 351 FAVSCLVISP*ICFTPGNAAIA*RSTATILTS*YLQHFVEGSW 223 + V ++I P F+PG + +S + Y+QHF GSW Sbjct: 353 YLVGDVLILPITAFSPGVGHMGSKSPNDPMA--YVQHFFAGSW 393 >SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2670 Score = 25.4 bits (53), Expect = 8.1 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +2 Query: 317 IQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEYVQSQLLLAAL 475 + GD+ +ETA + Q + D V D P + L ++ QS+ L+AL Sbjct: 1996 MDGDLEVRETAAEAFDSLQSILGDRAVDDVLPQLLKL--LESENQSEQALSAL 2046 >SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 426 Score = 25.4 bits (53), Expect = 8.1 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -2 Query: 575 KNCFNCEYSRETSFPLNILATNDLHS*AHGLLCSMQRVITEI 450 KNCF+ YSR S L++ L S S++R++ I Sbjct: 307 KNCFDDLYSRVLSIKNCFLSSESLDSELQSQFRSIRRILQRI 348 >SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 791 Score = 25.4 bits (53), Expect = 8.1 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = +2 Query: 311 KQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEYVQSQLLLAALNITTH 490 K+I+G +T N I E +GLK D D +G+H + V++ A N Sbjct: 190 KEIEGTVTN----NIHIAEERGLKVDDSGLDEEDLYSGVHRSIDVVRNYTRSNAYNKNNK 245 Query: 491 VLKNEGHLWP-KYSEEKMFP 547 K + H P ++ ++K+ P Sbjct: 246 DQKPKNHEAPHQHPQQKVVP 265 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,093,301 Number of Sequences: 5004 Number of extensions: 65543 Number of successful extensions: 182 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 170 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 182 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 331187010 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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