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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20971
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    95   9e-21
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    58   9e-10
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    40   4e-04
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   3.5  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   4.6  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    26   4.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.1  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    25   8.1  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   8.1  

>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 95.1 bits (226), Expect = 9e-21
 Identities = 48/81 (59%), Positives = 57/81 (70%)
 Frame = +2

Query: 266 IVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEY 445
           IVAVDLQ MA + GV  +Q DIT   T + I+  F    ADLVV DGAPDVTGLHD+DEY
Sbjct: 79  IVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADLVVSDGAPDVTGLHDLDEY 138

Query: 446 VQSQLLLAALNITTHVLKNEG 508
           +Q+Q+LLAA N+   VLK  G
Sbjct: 139 IQAQILLAAFNLAVCVLKPGG 159



 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 38/50 (76%), Positives = 45/50 (90%)
 Frame = +1

Query: 46  MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 195
           MG++SKDKRD YYRLAKE+GWRARSAFKLLQ+NE++N+F G  R VDLCA
Sbjct: 1   MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCA 50



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 39/61 (63%), Positives = 51/61 (83%)
 Frame = +1

Query: 511 FVAKIFRGKDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVNP 690
           FVAKIFRG+DVSLLYSQL+  F+ V+ +KPRSSR SSIE+FV+CE +NPP ++ P++  P
Sbjct: 161 FVAKIFRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVVCEDFNPPSNFQPDLTKP 220

Query: 691 L 693
           L
Sbjct: 221 L 221



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 198 PGSWSQVLTKNLRQN 242
           PGSWSQVL++ L +N
Sbjct: 52  PGSWSQVLSRELLKN 66


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 24/52 (46%), Positives = 39/52 (75%)
 Frame = +1

Query: 40  KNMGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 195
           K+  KT+K + D +Y+LAKE+G+R+R+AFKL+Q+N++Y+        +DLCA
Sbjct: 3   KSQKKTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCA 54



 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 26/61 (42%), Positives = 34/61 (55%)
 Frame = +1

Query: 508 SFVAKIFRGKDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVN 687
           +FV K+FR +D + L    KQ F  V  +KP SSRN S E FV+C  Y  P+   P   +
Sbjct: 154 TFVTKVFRSRDYNNLLWVFKQLFNKVEATKPPSSRNVSAEIFVVCRGYKAPKKLDPRFTD 213

Query: 688 P 690
           P
Sbjct: 214 P 214



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 28/88 (31%), Positives = 45/88 (51%)
 Frame = +2

Query: 233 STKCCKY*DVKIVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAP 412
           ++K CK   + IV VDL  +  +P       DIT  +  + +    +  KAD+V+ DGAP
Sbjct: 63  ASKTCKPGSL-IVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKADVVLHDGAP 121

Query: 413 DVTGLHDIDEYVQSQLLLAALNITTHVL 496
           +V      D Y Q+QL+L ++ +    L
Sbjct: 122 NVGSAWLQDAYGQAQLVLMSMKLACEFL 149


>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +1

Query: 508 SFVAKIFRGKDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNP 657
           SF+ K + G + + L + LK  F+ V V KP++S   S EA+ +C +  P
Sbjct: 169 SFICKFYMGDEDADLQNLLKSHFRFVQVMKPKASLKESREAYFVCLERKP 218



 Score = 35.1 bits (77), Expect = 0.010
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +1

Query: 58  SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFN 165
           +K  +D Y + +K + +R+R+A+KL+++N +Y   N
Sbjct: 12  AKRSKDFYRKKSKIDNFRSRAAYKLIELNSKYRFIN 47



 Score = 34.3 bits (75), Expect = 0.017
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
 Frame = +2

Query: 263 KIVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLK------------ADLVVCDG 406
           K++ +D+Q +A   GV  I GDI    T   + E  + L              D V+ D 
Sbjct: 75  KVIGIDIQHIAPPEGVLPIYGDIRDPNTLTKLFEALRLLHEPNTNDSIDCRVVDAVISDM 134

Query: 407 APDVTGLHDIDEYVQSQLLLAALNITTHVLKNEGHLWPKY 526
               TG+   D  +  +L  +AL++    LK+ G    K+
Sbjct: 135 LHKATGIRIRDHALSMELCASALHVALTFLKSNGSFICKF 174


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 677 FGT*SSGGLYFSQITKASMLEFLELLGLDTVTSLKNCFNCEYSRE 543
           FG    G +Y S   +AS   FLE L + T+ SL+     EYS E
Sbjct: 62  FGVVYPGIIYRSACPRASNFNFLESLHIRTIISLR---QEEYSEE 103


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 617  EFLELLGLDTVTSLKNCFNCE-YSRETSFPLNILATNDLHS*AHGLLCSMQRV-ITEIGH 444
            EFL+ L  D +T+LK C   E YS     P     T  + S    LL   +++ +T   H
Sbjct: 928  EFLKCLNEDQITALKKCHAAEHYSLILGMP-GTGKTTTISSLIRSLLAKKKKILLTSFTH 986

Query: 443  I 441
            +
Sbjct: 987  L 987


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 351 FAVSCLVISP*ICFTPGNAAIA*RSTATILTS*YLQHFVEGSW 223
           + V  ++I P   F+PG   +  +S    +   Y+QHF  GSW
Sbjct: 353 YLVGDVLILPITAFSPGVGHMGSKSPNDPMA--YVQHFFAGSW 393


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 317  IQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEYVQSQLLLAAL 475
            + GD+  +ETA    +  Q +  D  V D  P +  L  ++   QS+  L+AL
Sbjct: 1996 MDGDLEVRETAAEAFDSLQSILGDRAVDDVLPQLLKL--LESENQSEQALSAL 2046


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 575 KNCFNCEYSRETSFPLNILATNDLHS*AHGLLCSMQRVITEI 450
           KNCF+  YSR  S     L++  L S       S++R++  I
Sbjct: 307 KNCFDDLYSRVLSIKNCFLSSESLDSELQSQFRSIRRILQRI 348


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 311 KQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEYVQSQLLLAALNITTH 490
           K+I+G +T     N  I E +GLK D    D     +G+H   + V++     A N    
Sbjct: 190 KEIEGTVTN----NIHIAEERGLKVDDSGLDEEDLYSGVHRSIDVVRNYTRSNAYNKNNK 245

Query: 491 VLKNEGHLWP-KYSEEKMFP 547
             K + H  P ++ ++K+ P
Sbjct: 246 DQKPKNHEAPHQHPQQKVVP 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,301
Number of Sequences: 5004
Number of extensions: 65543
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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