Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20971
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667... 122 2e-28
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 53 3e-07
08_02_0010 - 11230407-11232416 31 0.68
08_02_0009 + 11216532-11218687,11220727-11225998 31 0.68
08_02_0006 + 11204835-11206382 31 0.68
08_02_0003 + 11180421-11180757,11180773-11185715 31 0.68
08_02_0002 + 11173365-11173512,11173528-11178470 31 0.68
08_01_1086 - 11150017-11151564 31 0.68
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 30 2.1
07_01_0129 - 959600-959625,960100-961428,961585-961657,962185-96... 29 3.6
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 28 6.4
02_02_0537 + 11308195-11309667 28 6.4
03_02_0831 + 11620831-11620883,11621002-11621106,11621399-11621873 28 8.4
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089... 28 8.4
01_05_0645 - 23899579-23904483 28 8.4
01_05_0404 - 21833736-21834035,21834506-21834662,21834834-218350... 28 8.4
>06_03_1314 +
29266320-29266346,29266463-29266556,29266663-29266712,
29266798-29266847,29266945-29267053,29267135-29267195,
29267291-29267343,29267629-29267721,29268091-29268166,
29268401-29268508,29268596-29268840
Length = 321
Score = 122 bits (295), Expect = 2e-28
Identities = 65/110 (59%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Frame = +2
Query: 182 WIFAHTRQLESSFNQEPSTKCCKY*DVK-IVAVDLQAMAALPGVKQIQGDITKQETANAI 358
W +R L Q P CK D+ IVA+DLQ MA + GV Q+QGDIT TA +
Sbjct: 55 WSQVLSRNLYVPAKQSPD---CKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVV 111
Query: 359 IEEFQGLKADLVVCDGAPDVTGLHDIDEYVQSQLLLAALNITTHVLKNEG 508
I F G KADLVVCDGAPDVTGLHD+DE+VQSQL+LAAL I THVLK G
Sbjct: 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGG 161
Score = 93.5 bits (222), Expect = 1e-19
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = +1
Query: 46 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 195
MGK SKDKRDIYYR AKEEGWRARSAFKLLQI++E+NIF+GV R VDLCA
Sbjct: 1 MGKASKDKRDIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKRVVDLCA 50
Score = 80.6 bits (190), Expect = 1e-15
Identities = 41/67 (61%), Positives = 48/67 (71%), Gaps = 4/67 (5%)
Frame = +1
Query: 511 FVAKIFRGKDVSLLYSQ----LKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPN 678
FVAKIFRGKD SLLY Q LK FF VT +KP+SSRNSSIEAF +CE Y+PPE +
Sbjct: 163 FVAKIFRGKDTSLLYCQCFMQLKLFFSQVTFAKPKSSRNSSIEAFAVCENYSPPEGFKEK 222
Query: 679 MVNPLLD 699
+ LL+
Sbjct: 223 DLYHLLE 229
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +1
Query: 46 MGKTS-KDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 195
MGKT K ++D +Y LAKE+G+R+R+AFKLLQ++ + +DLCA
Sbjct: 1 MGKTKGKQRQDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCA 51
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +2
Query: 266 IVAVDLQAMAALPGVKQIQGDITKQETANAI--IEEFQGLKA-DLVVCDGAPDVTGLHDI 436
+V VDL + + G + DIT + A+ + + G+ A D+V+ DG+P+V G
Sbjct: 70 VVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVAAFDVVLHDGSPNVGGAWAQ 129
Query: 437 DEYVQSQLLLAALNITTHVLKNEG 508
+ QS L++ A+ + T L +G
Sbjct: 130 EATAQSSLVIDAVRLATMFLAPKG 153
>08_02_0010 - 11230407-11232416
Length = 669
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 1 FLIILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 111
++ I+K +F E + K S ++ +IY +A E WR
Sbjct: 540 YIYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 576
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 1 FLIILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 111
++ I+K +F E + K S ++ +IY +A E WR
Sbjct: 2346 YIYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 2382
>08_02_0006 + 11204835-11206382
Length = 515
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 1 FLIILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 111
++ I+K +F E + K S ++ +IY +A E WR
Sbjct: 386 YIYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 422
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 1 FLIILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 111
++ I+K +F E + K S ++ +IY +A E WR
Sbjct: 1630 YIYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 1666
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 1 FLIILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 111
++ I+K +F E + K S ++ +IY +A E WR
Sbjct: 1567 YIYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 1603
>08_01_1086 - 11150017-11151564
Length = 515
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 1 FLIILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 111
++ I+K +F E + K S ++ +IY +A E WR
Sbjct: 386 YIYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 422
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 1 FLIILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 111
++ I+K +F E K S ++ +IY +A E WR
Sbjct: 987 YIYIMKGQFNFQEDGPSKLSDEEEEIYTTVANHENWR 1023
>07_01_0129 -
959600-959625,960100-961428,961585-961657,962185-962226
Length = 489
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -3
Query: 682 PYSAHNLLGDCI-SRKLQRLQCSNFL 608
PYS H LL +C+ SR+L+R NFL
Sbjct: 187 PYSMHLLLDNCLFSRQLEREHIMNFL 212
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 1 FLIILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 111
++ I+ +F E K S ++ +IY +A E WR
Sbjct: 1228 YIYIMNGQFNFQEDGPSKLSDEEEEIYTTIANHENWR 1264
>02_02_0537 + 11308195-11309667
Length = 490
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 1 FLIILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 111
++ I+ +F E K S ++ +IY +A E WR
Sbjct: 386 YIYIMNGQFNFQEDGPSKLSDEEEEIYTTIANHENWR 422
>03_02_0831 + 11620831-11620883,11621002-11621106,11621399-11621873
Length = 210
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 479 ITTHVLKNEGHLWPKYSEEKMFPC 550
+ T N+GH W KY E+K+ C
Sbjct: 26 VDTFAPHNDGHQWRKYGEKKINNC 49
>02_03_0155 +
15805683-15805743,15805824-15806105,15808293-15808959,
15809440-15810490
Length = 686
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 188 FAHTRQLESSFNQEPSTKCC-KY*DVKIVAVDLQAMAALPGVKQIQGDITKQE 343
+A T+ L + +Q P TKCC K +K +A L AL I ++ K +
Sbjct: 56 YASTKMLYEALSQSPLTKCCIKERSLKRLAAILYGCGALIYTMYITPNLKKSK 108
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 1 FLIILKS*ISFVEKNMGKTSKDKRDIYYRLAKEEGWR 111
++ I+ +F E K S ++ +IY +A E WR
Sbjct: 1505 YIYIMNRQFNFQEDGPSKLSDEEEEIYTTIANHENWR 1541
>01_05_0404 -
21833736-21834035,21834506-21834662,21834834-21835080,
21835424-21835637,21836565-21836728,21836843-21836950,
21841596-21841797,21843676-21844194
Length = 636
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 305 GVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHD 433
G+ +GD T E AN + + F+ + + CD D T +D
Sbjct: 90 GIALCRGDYTGDECANGLRKAFENAVENRLFCDRFRDATIYYD 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,009,868
Number of Sequences: 37544
Number of extensions: 379791
Number of successful extensions: 1037
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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