Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20971
(711 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52274| Best HMM Match : FtsJ (HMM E-Value=0) 138 5e-33
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 31 1.2
SB_1686| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-12) 30 1.6
SB_38258| Best HMM Match : Sec7 (HMM E-Value=5.1e-22) 30 2.1
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09) 30 2.1
SB_42027| Best HMM Match : CorA (HMM E-Value=0.65) 29 4.9
SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_37096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_52274| Best HMM Match : FtsJ (HMM E-Value=0)
Length = 316
Score = 138 bits (333), Expect = 5e-33
Identities = 68/87 (78%), Positives = 72/87 (82%)
Frame = +2
Query: 263 KIVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDE 442
KIVAVDLQAMA LPGV QIQGDITK TAN II F+G ADLV+CDGAPDVTGLHDIDE
Sbjct: 76 KIVAVDLQAMAPLPGVIQIQGDITKTSTANQIISHFEGEHADLVICDGAPDVTGLHDIDE 135
Query: 443 YVQSQLLLAALNITTHVLKNEGHLWPK 523
Y+Q QLLLAALNITTHVLK G+ K
Sbjct: 136 YIQGQLLLAALNITTHVLKPGGNFVAK 162
Score = 103 bits (247), Expect = 1e-22
Identities = 47/64 (73%), Positives = 54/64 (84%)
Frame = +1
Query: 508 SFVAKIFRGKDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVN 687
+FVAKIFRGKDVSLLY+QLK FF VT+ KPRSSRNSSIE+FV+C+ Y PP+ Y P M N
Sbjct: 158 NFVAKIFRGKDVSLLYAQLKVFFPTVTICKPRSSRNSSIESFVVCQGYAPPQGYKPTMSN 217
Query: 688 PLLD 699
PLLD
Sbjct: 218 PLLD 221
Score = 92.3 bits (219), Expect = 4e-19
Identities = 39/50 (78%), Positives = 48/50 (96%)
Frame = +1
Query: 46 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 195
MG++SKDKRDIYYRLAKEEGWRARSAFKLLQ+NE++++F+GV + VDLCA
Sbjct: 1 MGRSSKDKRDIYYRLAKEEGWRARSAFKLLQLNEDFDLFSGVSKVVDLCA 50
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 322 RGYYQTRNSKCYNRRVPRPQSRFGCM 399
RG +R + C++R+VPRP+ + CM
Sbjct: 609 RGTGGSRVASCFHRKVPRPKCKVSCM 634
>SB_1686| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-12)
Length = 362
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = +2
Query: 65 ISEIYITGLLKKKVGVHVAHLNFCKLTRNTTYLMVYCVQWIF 190
+S ++ G+ + +V ++ L + + TR +YL+V C+ W++
Sbjct: 120 VSVFHLLGITRDRVMAVLSPLQYSQTTRKKSYLVVVCI-WVY 160
>SB_38258| Best HMM Match : Sec7 (HMM E-Value=5.1e-22)
Length = 237
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 464 VITEIGHIHQYHVSLLHLAHHH 399
++ I H H YH LLH HHH
Sbjct: 164 IVIAIHHHHYYHHHLLHHHHHH 185
>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
Length = 304
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 464 VITEIGHIHQYHVSLLHLAHHH 399
++ I H H YH LLH HHH
Sbjct: 149 IVIAIHHHHYYHHHLLHHHHHH 170
>SB_42027| Best HMM Match : CorA (HMM E-Value=0.65)
Length = 369
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 475 EHNNPCA*E*RSFVAKIFRG--KDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEK 648
+HNN S + K+ +G D+SL +L++ T K R ++ +SIEA V E
Sbjct: 145 KHNNSRT---TSLIGKLLQGVLSDISLQADKLEEKLSDKTFEKTRKNKGASIEAVVRLED 201
Query: 649 YNPPED 666
+ +D
Sbjct: 202 DDAGDD 207
>SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 92 LKKKVGVHVAHLNFCKLTRNTTYLMVYCVQWIFAHTRQLESSFNQEPSTKCCKY*DVKIV 271
+ K G+H+ HLN L+ +TTY ++ + + + F + T Y +VK+
Sbjct: 37 ISKNYGLHITHLN--HLSEDTTYKSTERAKFKGKYDKYRNAKFIDQIDTSDNLYQEVKLT 94
Query: 272 AVDLQAMAAL 301
D QA +L
Sbjct: 95 YAD-QAKTSL 103
>SB_37096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 402 SHTTKSALRPWNSSIIAFAVSCLVISP*ICF 310
SH T L+ ++A A +C ++P ICF
Sbjct: 286 SHLTFEELKEAMDIVVAIAYACFAVNPFICF 316
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 204 CLVCAKIHCTQYTIK-YVVFLVNLQKFKCATCTPTFFFSKPVIYISLIF 61
C C K++C +Y +K ++ + KC C + FS P++ S F
Sbjct: 441 CDFCGKVYCRKYVLKIHMRTHTGFKPLKCKFCDKS--FSDPIVNSSGTF 487
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,554,831
Number of Sequences: 59808
Number of extensions: 475732
Number of successful extensions: 1156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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