Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20971
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01230.1 68418.m00029 FtsJ-like methyltransferase family prot...   119   2e-27
At5g01230.2 68418.m00030 FtsJ-like methyltransferase family prot...    93   2e-19
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    54   9e-08
At5g13830.1 68418.m01617 FtsJ-like methyltransferase family prot...    39   0.003
At3g14590.1 68416.m01847 C2 domain-containing protein low simila...    31   0.75 
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    29   3.0  
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot...    28   5.3  
At3g25727.1 68416.m03203 hypothetical protein                          28   7.0  
At2g05080.1 68415.m00530 hypothetical protein low similarity to ...    28   7.0  
At4g19340.1 68417.m02849 hypothetical protein                          27   9.3  
At4g19260.1 68417.m02840 kelch repeat-containing protein contain...    27   9.3  
At1g67570.1 68414.m07698 expressed protein                             27   9.3  

>At5g01230.1 68418.m00029 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 309

 Score =  119 bits (287), Expect = 2e-27
 Identities = 55/81 (67%), Positives = 63/81 (77%)
 Frame = +2

Query: 266 IVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEY 445
           IVA+DLQ MA + GV Q+QGDIT   TA  +I  F G KADLVVCDGAPDVTGLHD+DE+
Sbjct: 81  IVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF 140

Query: 446 VQSQLLLAALNITTHVLKNEG 508
           VQSQL+LA L I TH+LK  G
Sbjct: 141 VQSQLILAGLTIVTHILKEGG 161



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 42/50 (84%), Positives = 45/50 (90%)
 Frame = +1

Query: 46  MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 195
           MGK S+DKRDIYYR AKEEGWRARSAFKLLQI+EE+NIF GV R VDLCA
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCA 50



 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 41/63 (65%), Positives = 50/63 (79%)
 Frame = +1

Query: 511 FVAKIFRGKDVSLLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVNP 690
           F+AKIFRGKD SLLY QLK FF  VT +KP+SSRNSSIEAF +CE Y+PPE + P  ++ 
Sbjct: 163 FIAKIFRGKDTSLLYCQLKLFFPTVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPRDLHR 222

Query: 691 LLD 699
           LL+
Sbjct: 223 LLE 225


>At5g01230.2 68418.m00030 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 61

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 42/50 (84%), Positives = 45/50 (90%)
 Frame = +1

Query: 46  MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 195
           MGK S+DKRDIYYR AKEEGWRARSAFKLLQI+EE+NIF GV R VDLCA
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCA 50


>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
 Frame = +1

Query: 46  MGKTS-KDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCA 195
           MGK   K + D YYRLAKE G+R+R+++KLLQ++ +Y++ +     +DLCA
Sbjct: 1   MGKVKGKHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCA 51



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
 Frame = +2

Query: 266 IVAVDLQAMAALPGVKQIQGDITKQETANAI--IEEFQGLKA-DLVVCDGAPDVTGLHDI 436
           ++ +DL  +  + G   +  DIT+ E  + I  + E  G+ A +LV+ DG+P+V G    
Sbjct: 70  VLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGSPNVGGAWAQ 129

Query: 437 DEYVQSQLLLAALNITTHVLKNEGHLWPK 523
           +   Q+ L++ ++ + T  L   G+L  K
Sbjct: 130 EAMSQNALVIDSVRLATEFLARNGNLVTK 158


>At5g13830.1 68418.m01617 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 224

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 73  DIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDL-CA 195
           D +YR A+  G+ ARSAFKLLQI ++Y +       +DL CA
Sbjct: 8   DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCA 49


>At3g14590.1 68416.m01847 C2 domain-containing protein low
           similarity to SP|Q16974 Calcium-dependent protein kinase
           C (EC 2.7.1.-) {Aplysia californica}; contains Pfam
           profile PF00168: C2 domain
          Length = 737

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 335 KQETANAIIEEFQGLKADLVVCDGAP-DVTGLHDIDEYVQSQLLLAALNITTHVLKNEGH 511
           K+  A+A++E  +        CD  P D+ GL   D YV+ QL   A    T +L     
Sbjct: 279 KEPVAHALVEVVEA-------CDVKPSDLNGL--ADPYVKGQL--GAYRFKTKILWKT-- 325

Query: 512 LWPKYSEEKMFPCCTHN*NSFLNL 583
           L PK+ EE   P CT +  + LN+
Sbjct: 326 LAPKWQEEFKIPICTWDSANILNI 349


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 553  YSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVNP 690
            Y +L+   K+   S P S R  S  +    +   PPE  +P++ NP
Sbjct: 1216 YPELQMSIKIQVTSAPTSEREESGYSTPHSKTTPPPESGIPSITNP 1261


>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor, Homo
            sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1793

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +2

Query: 410  PDVTGLHDIDEYVQSQLLLAALNITTHVLKNEGH-----LWPKYSEEKMFP 547
            P ++GL ++    + ++  +AL I    L+N GH     LW K  E  +FP
Sbjct: 1349 PLLSGLSELSFDPRPEIRKSALQIMFDTLRNHGHLFSLPLWEKVFESVLFP 1399


>At3g25727.1 68416.m03203 hypothetical protein
          Length = 153

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 531 SEYFGHK*PSFLSTWVVMFNA 469
           ++  GH+  SFL+TW  MFNA
Sbjct: 133 AQRLGHQGTSFLATWFGMFNA 153


>At2g05080.1 68415.m00530 hypothetical protein low similarity to
           SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 1238

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +1

Query: 547 LLYSQLKQFFKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMVNP 690
           L Y  L  +        PR  RN  ++A  +C+ +  P+ ++    NP
Sbjct: 265 LKYQGLACYLPATFTGGPRYMRNMYLDAMAVCKHFGFPDYFITFTCNP 312


>At4g19340.1 68417.m02849 hypothetical protein
          Length = 232

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 523 IFRGKDVSLLYSQLKQF--FKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMV 684
           +FRG D+ LL +Q   F   KLV +  P +   + +  F    ++N    +V +++
Sbjct: 81  VFRGSDIKLLAAQETLFLKLKLVILIAPIADNEAHVTVFRFRARHNSAIGHVGSLI 136


>At4g19260.1 68417.m02840 kelch repeat-containing protein contains
           Pfam profile PF01344: Kelch motif
          Length = 288

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 523 IFRGKDVSLLYSQLKQF--FKLVTVSKPRSSRNSSIEAFVICEKYNPPEDYVPNMV 684
           +FRG D+ LL +Q   F   KLV +  P +   + +  F    ++N    +V +++
Sbjct: 81  VFRGSDIKLLAAQETLFLKLKLVILIAPIADNEAHVTVFRFRARHNSAIGHVGSLI 136


>At1g67570.1 68414.m07698 expressed protein
          Length = 456

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = -2

Query: 653 LYFSQITKASM-LEFLELLGLD-----TVTSLKNCFNCEYSRETSFPLNILATNDLHS*A 492
           L F+Q +K S+ L ++  L +      TV  L +C  CE  +  SF LNI+ +  L +  
Sbjct: 61  LGFNQSSKQSLVLSWIVFLSIGLVLPVTVLELGHCLGCERYQYKSFELNIVVSQALLA-G 119

Query: 491 HGLLC 477
             LLC
Sbjct: 120 VSLLC 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,390
Number of Sequences: 28952
Number of extensions: 324790
Number of successful extensions: 961
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)