Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20970
         (638 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F20324 Cluster: PREDICTED: hypothetical protein;...    33   7.7  
UniRef50_A2XB81 Cluster: Putative uncharacterized protein; n=1; ...    33   7.7  
UniRef50_Q57V65 Cluster: Putative uncharacterized protein; n=1; ...    33   7.7  

>UniRef50_UPI0000F20324 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 166

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = -1

Query: 467 MNEKSLERSIKM*VRGKTVRKEKEKDRTKARWRRRLNEQSVKK 339
           M +K+ +++ K   + KT++K+  K  TK   ++ +NE+++KK
Sbjct: 1   MKKKTTKKTTKKTTKKKTIKKKTMKKTTKKTMKKTINEKTLKK 43


>UniRef50_A2XB81 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (indica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. indica
           (Rice)
          Length = 97

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 13/34 (38%), Positives = 26/34 (76%)
 Frame = -1

Query: 422 GKTVRKEKEKDRTKARWRRRLNEQSVKKGVR*YL 321
           G+T  KE+E+D T A+ +R+L++++ ++G + YL
Sbjct: 62  GQTQGKERERDFTSAKEKRKLSDRARRRGAQAYL 95


>UniRef50_Q57V65 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 179

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +3

Query: 261 LFYCCIFIVLFSNLLYFNIN*ILSDAFFYALLVQTSSPSCFCSVLLFFLSNRFPSHSHLN 440
           L YCC+F+++   LL+  I+   S +F    L+            LFFL   + +HSHL 
Sbjct: 59  LCYCCVFLLVLVELLFCLISFFFSSSFSPTYLID----------FLFFLHFLYFNHSHL- 107

Query: 441 TPFQTLFIHTF 473
           +PF    + +F
Sbjct: 108 SPFLLCLLLSF 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,873,899
Number of Sequences: 1657284
Number of extensions: 9132811
Number of successful extensions: 23374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22598
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)