Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20970
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    30   0.014
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   1.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   8.7  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   8.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 0.014
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +3

Query: 255 IRLFYCCIFIVLFSNLLYFNIN*ILSDAFFYALLVQTSSPSCFCSVLLFFLSNRFPSHSH 434
           + L +CC FI+   +LL+     +L   +FY  L+       FC   + F ++ + + S 
Sbjct: 264 MHLLFCCAFIIFTMHLLF-----LLCIYYFYCALIILLCIYYFCRAFIIFPTHFYCAFS- 317

Query: 435 LNTPFQTLFIHTFRSY-EKKLGL 500
           L     T +++  R + E+ +G+
Sbjct: 318 LYPLKSTFYLNVVRPFPERSMGI 340



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 255 IRLFYCCIFIVLFSNLLY 308
           + L +CC FI    +LL+
Sbjct: 178 MHLLFCCAFIFFNMHLLF 195


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 261 LFYCCIFIVLFS--NLLYFNIN*ILSDAFFYALLVQ 362
           +F    FI+ F+  ++ Y N++   +DAFFY  L+Q
Sbjct: 163 VFDLVYFILAFACISIAYTNVS---TDAFFYTCLIQ 195


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 387 SVLLFFLSNRFPSHSHLNTPFQTLFIHT 470
           S + FF S++ P+ SH    F T  +HT
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFFTETLHT 178


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 387 SVLLFFLSNRFPSHSHLNTPFQTLFIHT 470
           S + FF S++ P+ SH    F T  +HT
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFFTETLHT 178


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 387 SVLLFFLSNRFPSHSHLNTPFQTLFIHT 470
           S + FF S++ P+ SH    F T  +HT
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFFTETLHT 178


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 387 SVLLFFLSNRFPSHSHLNTPFQTLFIHT 470
           S + FF S++ P+ SH    F T  +HT
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFFTETLHT 178


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 569 YCFLLMITTITGRHNDM 619
           YC L+++TTI   +  +
Sbjct: 284 YCLLILLTTIVASYGSV 300


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 569 YCFLLMITTITGRHNDM 619
           YC L+++TTI   +  +
Sbjct: 284 YCLLILLTTIVASYGSV 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,815
Number of Sequences: 336
Number of extensions: 2666
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)