Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20970
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    29   0.75 
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.7  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   5.3  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   7.0  

>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 378 CFCSVLLFFLSNRFPSHSHLNTPFQTLFIHTFRSYEKKL---GLF*HVVLRRHDYVERLQ 548
           C+   L+  L N F S +H+   F  L +H FR Y +++    +   ++ +   Y  R  
Sbjct: 205 CWNRFLITELDNHF-SEAHILEKFPNLLLHCFRGYVERMFIDSMSMSIISKVSSYGSRQT 263

Query: 549 YTP 557
           Y P
Sbjct: 264 YPP 266


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 273 CIFI-VLFSNLLYFNIN*ILSDAFFYALLVQ 362
           C F+  LF +  Y++I+   S AFF+ LL+Q
Sbjct: 279 CFFLSALFHDFAYWSISGRCSPAFFFQLLIQ 309


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 428 VRGKTVRKEKEKDRTKARWRRRLNEQSVKKG 336
           VR KT +KEKE+++ +    R+  +Q+ KKG
Sbjct: 175 VRVKT-KKEKEREKKEREKLRKKQQQAKKKG 204


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 215 NVTLYVELKSWRINKTILLLHFYC 286
           N+TLY  LK   + K  L+L  YC
Sbjct: 207 NITLYPLLKGLDVGKVTLVLKEYC 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,361
Number of Sequences: 5004
Number of extensions: 43114
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)