Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20970
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0337 + 19678152-19678484,19678616-19678801,19679232-196794...    29   4.1  
01_01_0566 - 4166511-4166632,4167302-4167375,4167509-4167648,416...    28   5.4  
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400...    28   7.2  

>06_03_0337 +
           19678152-19678484,19678616-19678801,19679232-19679417,
           19680840-19680926,19681045-19681086,19681164-19681253,
           19681399-19681503,19681797-19681835,19681914-19682018,
           19682463-19682531,19682587-19682736,19683156-19683335
          Length = 523

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 429 SERENG*KGKREGQNKSKMAKTFERAKRKKRR 334
           SE EN   GKR   N  KM +  E++KRKK++
Sbjct: 44  SEGENNATGKRREHNNKKMKE--EKSKRKKKQ 73


>01_01_0566 -
           4166511-4166632,4167302-4167375,4167509-4167648,
           4167731-4167802,4167915-4167984,4168112-4168185,
           4168316-4168487,4168887-4168976,4169151-4169175,
           4169273-4169432,4169855-4170265,4170443-4170559
          Length = 508

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 243 DFSSTYNVTFHFY*MQYLNTIKNAKTH 163
           DFS  +++ F F+ + +L+T++  KTH
Sbjct: 167 DFSLRFSLHFLFFFVMFLSTVRTRKTH 193


>12_01_0505 -
           4005211-4005234,4005235-4005432,4005522-4006006,
           4006533-4006700,4007128-4007203,4007327-4007409,
           4007511-4007589,4007685-4007753,4008174-4008266,
           4008668-4008713,4009398-4009522
          Length = 481

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = -3

Query: 240 FSSTYNVTFHFY*MQYLNTIKNAKTHGVSDLGRGKILRLVGDDSGLFYLGFRFREHIQYT 61
           FS TYN ++     +    I+N  THG+ +       R   +D   + L   F++ +   
Sbjct: 377 FSPTYNRSYKKSSSECFKFIRNWLTHGIENFNTSDPRRFTTEDMD-YLLEIVFKDFLADI 435

Query: 60  LFTLIETS 37
           ++TL++ +
Sbjct: 436 VWTLLQNN 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,467
Number of Sequences: 37544
Number of extensions: 231611
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)