Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20970
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)                  31   1.0  
SB_10138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)            28   5.6  
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   27   9.7  
SB_37033| Best HMM Match : Annexin (HMM E-Value=0)                     27   9.7  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.7  
SB_57800| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21)                 27   9.7  

>SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)
          Length = 549

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +3

Query: 429 SHLNTPFQTLFIHTFRSYEKKLGLF*HVVLRRHDYVERLQ----YTPYLQIIVF 578
           +HL   F   F+    S E  L    HVVL  H   ERL     + PYL I+ F
Sbjct: 478 NHLGLKFCVFFVGPLISREHGLRSMPHVVLALHVLCERLHEDSTWAPYLSILTF 531


>SB_10138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 223 CHVSFLLNAISKHN*KCEDTRGQRPRTR 140
           C ++  LN  S+H+   E+T G RP TR
Sbjct: 276 CRITVALNPESEHDPGLENTTGNRPATR 303


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = -1

Query: 527  VSSQYDVLK*A*FFFVRTKCMNEKSLERSIKM*VRGKTVRKEKEKDRTKARWRRRLNEQS 348
            VSS+ +VLK     F   K ++EK  ER  +   RG ++  + ++ R K +   + NE  
Sbjct: 2200 VSSEVEVLKALKSLFEHHKALDEKVRERLRQAVERGNSLEGDLDEARDKIKQLEQENEDI 2259

Query: 347  VKKGVR 330
              + +R
Sbjct: 2260 RLRNLR 2265


>SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)
          Length = 305

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 351 LLVQTSSPSCFCSVLLFFLSNRFPSHSHLNTPFQTL 458
           L ++ +S SC C+V L+F  N     S + T   TL
Sbjct: 120 LSIRCASRSCICAVFLWFTHNSIRRQSKMATSMGTL 155


>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/83 (27%), Positives = 39/83 (46%)
 Frame = -3

Query: 588 IIKRKQ*FVSTGCIEDVQRSRVFSIRRAKISLIFFRKNEMYE*KEFGTEY*DVSERENG* 409
           I + K+   S G  E++   R  +I   K    FF + +  E K+  T+Y DV ++    
Sbjct: 318 IAEEKEVKTSKGVEEEIAPKRGTAISAVK----FFEQKQKEEFKKEETDYLDVFKKGGTT 373

Query: 408 KGKREGQNKSKMAKTFERAKRKK 340
           K K E ++K K  K  +  + K+
Sbjct: 374 KDKIEKKDKKKHHKKHKDKEHKE 396


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = -3

Query: 426 ERENG*KGKREGQNKSKMAKTFERAKRKKRRQIIFN*Y*NREDLRREQ 283
           ER+   K +RE + ++   K  E  +R+++++++       E++RR+Q
Sbjct: 578 ERKTLEKERREAEARALQQKQQEEEERRRQQELLLQRQREEEEMRRQQ 625


>SB_37033| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 287

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 339 FFYALLVQTSSPSCFCSVLLFFLSNRFPS-HSHLNTPFQTLF 461
           FFY L + ++ P C    L++ L +R  S    ++  ++T+F
Sbjct: 89  FFYTLDIASNKPGCDNKALMYLLCSRTNSQRQRISLEYKTMF 130


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 214  SFLLNAISKHN*KCEDTRGQRPRTR*NFTLSRRRFRAILSR-LSVSGT 74
            +F L ++SK+N    DT+G+   T+ N T ++ R   I +R   ++GT
Sbjct: 2539 TFTLGSVSKNNESQRDTKGKESDTKGNKTGAKGREAVIKNRDTYINGT 2586


>SB_57800| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21)
          Length = 298

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 119 ATIPGYFISAFGFGNIFNTLCLH*SKHLEASRNLSH 12
           AT  GYFIS     N+FN L +   ++L   + L++
Sbjct: 73  ATAEGYFISIILQANVFNLLAVTFDRYLAVMKPLTY 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,578
Number of Sequences: 59808
Number of extensions: 300106
Number of successful extensions: 827
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)