BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20970 (638 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08) 31 1.0 SB_10138| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2 SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6 SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25) 28 5.6 SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4 SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 27 9.7 SB_37033| Best HMM Match : Annexin (HMM E-Value=0) 27 9.7 SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 SB_57800| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21) 27 9.7 >SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08) Length = 549 Score = 30.7 bits (66), Expect = 1.0 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Frame = +3 Query: 429 SHLNTPFQTLFIHTFRSYEKKLGLF*HVVLRRHDYVERLQ----YTPYLQIIVF 578 +HL F F+ S E L HVVL H ERL + PYL I+ F Sbjct: 478 NHLGLKFCVFFVGPLISREHGLRSMPHVVLALHVLCERLHEDSTWAPYLSILTF 531 >SB_10138| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 327 Score = 28.7 bits (61), Expect = 4.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -2 Query: 223 CHVSFLLNAISKHN*KCEDTRGQRPRTR 140 C ++ LN S+H+ E+T G RP TR Sbjct: 276 CRITVALNPESEHDPGLENTTGNRPATR 303 >SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3259 Score = 28.3 bits (60), Expect = 5.6 Identities = 19/66 (28%), Positives = 33/66 (50%) Frame = -1 Query: 527 VSSQYDVLK*A*FFFVRTKCMNEKSLERSIKM*VRGKTVRKEKEKDRTKARWRRRLNEQS 348 VSS+ +VLK F K ++EK ER + RG ++ + ++ R K + + NE Sbjct: 2200 VSSEVEVLKALKSLFEHHKALDEKVRERLRQAVERGNSLEGDLDEARDKIKQLEQENEDI 2259 Query: 347 VKKGVR 330 + +R Sbjct: 2260 RLRNLR 2265 >SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25) Length = 305 Score = 28.3 bits (60), Expect = 5.6 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +3 Query: 351 LLVQTSSPSCFCSVLLFFLSNRFPSHSHLNTPFQTL 458 L ++ +S SC C+V L+F N S + T TL Sbjct: 120 LSIRCASRSCICAVFLWFTHNSIRRQSKMATSMGTL 155 >SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 903 Score = 27.9 bits (59), Expect = 7.4 Identities = 23/83 (27%), Positives = 39/83 (46%) Frame = -3 Query: 588 IIKRKQ*FVSTGCIEDVQRSRVFSIRRAKISLIFFRKNEMYE*KEFGTEY*DVSERENG* 409 I + K+ S G E++ R +I K FF + + E K+ T+Y DV ++ Sbjct: 318 IAEEKEVKTSKGVEEEIAPKRGTAISAVK----FFEQKQKEEFKKEETDYLDVFKKGGTT 373 Query: 408 KGKREGQNKSKMAKTFERAKRKK 340 K K E ++K K K + + K+ Sbjct: 374 KDKIEKKDKKKHHKKHKDKEHKE 396 >SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) Length = 924 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/48 (25%), Positives = 28/48 (58%) Frame = -3 Query: 426 ERENG*KGKREGQNKSKMAKTFERAKRKKRRQIIFN*Y*NREDLRREQ 283 ER+ K +RE + ++ K E +R+++++++ E++RR+Q Sbjct: 578 ERKTLEKERREAEARALQQKQQEEEERRRQQELLLQRQREEEEMRRQQ 625 >SB_37033| Best HMM Match : Annexin (HMM E-Value=0) Length = 287 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = +3 Query: 339 FFYALLVQTSSPSCFCSVLLFFLSNRFPS-HSHLNTPFQTLF 461 FFY L + ++ P C L++ L +R S ++ ++T+F Sbjct: 89 FFYTLDIASNKPGCDNKALMYLLCSRTNSQRQRISLEYKTMF 130 >SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2982 Score = 27.5 bits (58), Expect = 9.7 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = -2 Query: 214 SFLLNAISKHN*KCEDTRGQRPRTR*NFTLSRRRFRAILSR-LSVSGT 74 +F L ++SK+N DT+G+ T+ N T ++ R I +R ++GT Sbjct: 2539 TFTLGSVSKNNESQRDTKGKESDTKGNKTGAKGREAVIKNRDTYINGT 2586 >SB_57800| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21) Length = 298 Score = 27.5 bits (58), Expect = 9.7 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -1 Query: 119 ATIPGYFISAFGFGNIFNTLCLH*SKHLEASRNLSH 12 AT GYFIS N+FN L + ++L + L++ Sbjct: 73 ATAEGYFISIILQANVFNLLAVTFDRYLAVMKPLTY 108 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,637,578 Number of Sequences: 59808 Number of extensions: 300106 Number of successful extensions: 827 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 748 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 822 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1608851125 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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