Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20970
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28330.1 68417.m04056 expressed protein                             28   6.0  
At2g45700.1 68415.m05682 sterile alpha motif (SAM) domain-contai...    28   6.0  
At4g28340.1 68417.m04057 hypothetical protein                          27   7.9  

>At4g28330.1 68417.m04056 expressed protein 
          Length = 149

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 258 RLFYCCIFIVLFSNLLYFNIN*ILSDAFFYALLVQTSS--PSCFCSVLL 398
           R  + C+F+V+++ LL  + N + S   +Y    QTSS  P+ + SVLL
Sbjct: 14  RRTWACLFLVVYAILLSSSWNSLNSIVNWYGENHQTSSGLPAIYASVLL 62


>At2g45700.1 68415.m05682 sterile alpha motif (SAM)
           domain-containing protein similar to SNM1 protein [Mus
           musculus] GI:7595835; contains Pfam profile PF00536: SAM
           domain (Sterile alpha motif)
          Length = 723

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 328 YLTPFFTLCSFKRLRHLA 381
           ++ P +TL SFKRL+H+A
Sbjct: 620 HVVPLWTLASFKRLKHVA 637


>At4g28340.1 68417.m04057 hypothetical protein 
          Length = 159

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 258 RLFYCCIFIVLFSNLLYFNIN*ILSDAFFYALLVQTSS--PSCFCSVLL 398
           R  + C+F+V+++ LL  + N + S   +Y    QTSS  P+ + SVLL
Sbjct: 23  RRTWVCLFLVVYAVLLSSSRNSLNSIVNWYGENHQTSSGLPAIYASVLL 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,494,966
Number of Sequences: 28952
Number of extensions: 207850
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)