Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20969
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    31   0.16 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    30   0.28 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.0  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   3.4  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   3.4  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   3.4  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   3.4  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    26   6.0  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   6.0  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   6.0  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   6.0  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   6.0  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    25   7.9  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 23/105 (21%), Positives = 54/105 (51%)
 Frame = +1

Query: 67  KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 246
           K P +E  P   V+ L+ +   I    +I +++ +  ++  +VV+ P + ++ +I+ +  
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435

Query: 247 SDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 381
           +    +   +KM K+  L      P PR++ +T+H+I +  ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 22/92 (23%), Positives = 44/92 (47%)
 Frame = +3

Query: 375 AEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQAACNISKKISALKYKS 554
           A K  S+ + D N +EI   +  +       +W + TEQ+ ELQ +C  S +   +   S
Sbjct: 556 ALKFSSNDQKDDNVSEIPT-ESLEYKKLRCLRWKSLTEQVVELQPSCKSSSQRHLIIRNS 614

Query: 555 *MKRYILLNQLTPSRPLLSRKRQIKLLLKQSN 650
             +  +L      S  ++   +Q++ LL++++
Sbjct: 615 WARNLLLRLTGCSSEAIVENFKQLRCLLQENS 646


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -1

Query: 553  LLYLSAEIFLEMLQAAWSSLICSVRAY---HFPIPSDTS 446
            L  L AEI LE LQ +W  L C   A    HF I  D+S
Sbjct: 3894 LFSLDAEISLEKLQNSWKRL-CQKNAILRTHFAISEDSS 3931


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 563 FHSTFVFERRNFLGNVASCLE 501
           FHSTF+F+   F  NV S L+
Sbjct: 531 FHSTFLFQNYEFSDNVISLLK 551


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 294 RPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 422
           +P  D RN GP Q  + + + PE H ++  E+ +  + ++ N  E
Sbjct: 151 KPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 327 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 413
           P +++  T++ E HED +  V  +++D N
Sbjct: 24  PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 316 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 423
           +P P S+    HR LN  K+    F P  +  T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 1   ETTRGPVANYIRARRTRTSIPDKVPEAEDKPLNVVENLSSEQELIDQ 141
           +TT  P  N     +TR  IP +     + PLN+  ++ +  + I Q
Sbjct: 120 QTTNSPFINVTYILKTRVKIPSQPDFVFEYPLNLKRSIVTNADKIAQ 166


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 25/107 (23%), Positives = 44/107 (41%)
 Frame = +1

Query: 67  KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 246
           ++ E E     V++    E+EL      +K  +N ++    E+   P +   +  K    
Sbjct: 646 EIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGD-EIRSRPARTWFQSEKDKQA 704

Query: 247 SDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKS 387
           S     K +  + K +      E+P  R+ K TK+  L+  K  KKS
Sbjct: 705 SKASEAKDKKSLAKRKKQMEKEEVP--RAYKKTKNDRLSNKKSTKKS 749


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 4   TTRGPVANYIRARRTRTSIPDKVPEAEDKPLNVVENLSSEQEL 132
           T +GP   YI      T+IP K    + KP+ + + L S + L
Sbjct: 228 TYQGPKEQYIPMTSHSTNIPVKPQMKKSKPITIGKPLISMEHL 270


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +3

Query: 324 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 491
           PP H ++ TQ    HEDA+    S  + +    I  R  ++      G +    EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +3

Query: 294 RPLVDLRNPGPPQHQEHE--TQNPEHHEDAEKIVSSVKNDI---NTAEIALRQGFQEVSD 458
           RPL++LR P P    E +   +N ++    + I+ S +      N+    ++ GF++ ++
Sbjct: 597 RPLINLRQPKPLLRSEADCIIKNLQNFSTDDLIIKSNEKFTAAKNSLINVIKSGFEQ-NE 655

Query: 459 GIGKWYARTEQINELQAAC 515
            I  ++ +T  +  L   C
Sbjct: 656 FINPYFLQTNYLKNLLCCC 674


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 10  RGPVANYIRARRTRTSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRAN 183
           +G   N    +R   +IP +   A   P     N+SS       +NTI ++D++L+A+
Sbjct: 222 KGLEMNGFSKKRDNVNIPKRTYSARSIP----SNISSTNVATTPSNTIFEMDDTLKAD 275


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 52  TSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDI 162
           TSI   +  +++K  NV+E+LSS  + +   +++ D+
Sbjct: 368 TSINALLERSKEKKANVIESLSSAMDAVLATSSLDDL 404


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 319 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 462
           P   +  + K  I   +K++  + LP+ +T  Q K LFVK+   C+ V
Sbjct: 39  PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,378
Number of Sequences: 5004
Number of extensions: 46278
Number of successful extensions: 214
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)