Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20969
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 35 0.071
01_04_0107 + 16086724-16086799,16088007-16088288,16088523-160885... 31 0.67
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 31 0.88
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 31 1.2
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 30 2.0
08_02_1053 - 23968372-23968442,23969245-23969294,23970396-239704... 30 2.0
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427... 29 2.7
07_01_0516 - 3850252-3852870 29 3.5
04_01_0327 + 4325225-4327486 29 4.7
02_02_0233 + 8105765-8107840 28 6.2
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 8.2
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 34.7 bits (76), Expect = 0.071
Identities = 25/93 (26%), Positives = 47/93 (50%)
Frame = +1
Query: 70 VPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKS 249
+ A+ K L++ E S EQEL +++ D+ L+AN + + +K +EE+K +
Sbjct: 673 ISSADSKTLSL-EAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIK--IEELKRQ-RD 728
Query: 250 DLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 348
+LKTL+ + G + ++ RS+ K
Sbjct: 729 NLKTLEANLDQTVRDGAKDLEQLMSSRSMHLAK 761
>01_04_0107 +
16086724-16086799,16088007-16088288,16088523-16088585,
16088684-16089045
Length = 260
Score = 31.5 bits (68), Expect = 0.67
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Frame = +1
Query: 13 GPVANYIRARRTRTSIPDKVPEAEDKPLNVVENLSS----EQELIDQANT-IKDIDNSLR 177
G +A + R++ S+ + +P++ KP+ V +SS E L D A+ +K+ D+
Sbjct: 162 GKMAFSVLIFRSKNSLAELIPDS--KPIEEVLAISSFEFPESLLKDDASAFVKEEDDPRE 219
Query: 178 ANKKEVVDIPVKVIVEEIKPSL 243
+ D+P + +VE KPSL
Sbjct: 220 VIELPKTDLPSQPLVEPFKPSL 241
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 31.1 bits (67), Expect = 0.88
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 294 RPLVDLRNPGPPQHQEHETQNPEHHEDAEK 383
RPL L +P PP Q ET+ E +++E+
Sbjct: 98 RPLPSLASPPPPTQQPQETEEQEQQQESEE 127
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 88 KPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLKTLK 267
+P +V + S ++E N + L+ + P K IV++ SLK D K +K
Sbjct: 285 RPSDVSASASVKREPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMK 344
Query: 268 CRMKMRKS 291
+MK +K+
Sbjct: 345 MKMKTKKT 352
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +1
Query: 40 RRTRTSIPDKVPEAEDKPLNVVE-NLSSE---QELIDQANTIKDIDNSLR 177
++T+ ++ + V E + + N+ E N SSE QEL D+ N++KD N L+
Sbjct: 379 KQTKVNLENAVSELKKEVENLTEQNRSSELLIQELRDEINSLKDSKNELQ 428
>08_02_1053 -
23968372-23968442,23969245-23969294,23970396-23970457,
23970527-23970709,23970737-23970901,23972235-23972408
Length = 234
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 360 EHHEDA-EKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQAACNISKKIS 536
E H+D K V +ND + E+ + KW+A EQ+++ N+S KIS
Sbjct: 123 ESHDDLMAKTVKIYENDFKDGPFLFMHCWNELKNQ-PKWHAYLEQLDKSNKRKNVSHKIS 181
Query: 537 ALK 545
K
Sbjct: 182 YAK 184
>03_06_0204 +
32341756-32341843,32341943-32342025,32342690-32342765,
32342876-32342943,32343001-32343045,32343308-32343392,
32344270-32344385,32344497-32344580,32345394-32345540,
32345845-32345956,32346027-32346146,32346338-32346411
Length = 365
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +3
Query: 333 HQEHETQNPEHH---EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQIN 497
H+ + Q + H EDAEK+V SVK + E G +V G ++ +N
Sbjct: 152 HEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLN 209
>07_01_0516 - 3850252-3852870
Length = 872
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 275 IRHFNVFKSLFNDGLISSTITLTGMSTTSFLFARRLLS 162
+R +FK + DGL S +T+TG+ + A R +S
Sbjct: 377 LRGLGLFKQMLEDGLEISDVTVTGVLNACAITAERKMS 414
>04_01_0327 + 4325225-4327486
Length = 753
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 118 SEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLKTLKCRMKMRKSRG 297
S + +I + N K + + KE+ D KV+ +E +L D+ L+ + +RK RG
Sbjct: 423 SNETMIPE-NVKKLVSELVSRQLKELRDYVKKVVAQEGADALSQDVNLLEMAVYLRKKRG 481
>02_02_0233 + 8105765-8107840
Length = 691
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 360 EHHEDAEKIVSSVKNDINTAEIALRQ--GFQEVSDGIGKWYARTEQ 491
EH KI+ ++ D+ + ++LR + +D G W R EQ
Sbjct: 426 EHRSSTAKIIGFIRKDLTSGWVSLRSVADHRRFNDRRGHWTLRREQ 471
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +3
Query: 360 EHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTE-QINELQA----ACNIS 524
+H + E VSS+K + EI + ++VS +W A E ++EL+A A +
Sbjct: 1679 QHVAELEVQVSSLKQQLQETEIHYKHKEEQVSLREVQWEADQEHSVSELKAQRQYAAELE 1738
Query: 525 KKISAL 542
K+I AL
Sbjct: 1739 KQIGAL 1744
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,160
Number of Sequences: 37544
Number of extensions: 291572
Number of successful extensions: 1134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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