Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20969
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7) 32 0.39
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_48596| Best HMM Match : Filament (HMM E-Value=0.23) 30 2.1
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09) 29 3.6
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014) 28 6.3
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044) 28 6.3
SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)
Length = 149
Score = 32.3 bits (70), Expect = 0.39
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 49 RTSIPDKVPEAEDKPLNVVENLSSEQELIDQ-ANTIKDIDNSLRANKKEVVDIPVKVIVE 225
+ SIP P+ + K LN VEN++ +E ++ A+ + D+ N + + K E V V+
Sbjct: 72 KDSIPLAKPQKQQKVLNAVENINWPEEKKERFADVLNDVHN-ISSEKSEEEGDGVVFFVK 130
Query: 226 EIKPSLKSDLKTLK 267
+K + +++L+ LK
Sbjct: 131 SLKWA-RNELRILK 143
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 31.9 bits (69), Expect = 0.51
Identities = 23/84 (27%), Positives = 45/84 (53%)
Frame = +1
Query: 34 RARRTRTSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVK 213
R R+ + +KV E+ D + +EN EL +Q IK+ + L+ +KE+ + K
Sbjct: 593 RDRQIQNLSLEKVNESRDDEITELEN-----ELEEQREIIKENEEKLKEKEKEIEKLKKK 647
Query: 214 VIVEEIKPSLKSDLKTLKCRMKMR 285
+I E+ LK D++T + +++ +
Sbjct: 648 II--ELSDKLK-DMETSRNKVETK 668
>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 318 PGPPQHQEHETQNPEHHEDAEKIVSSVKN---DINTAEIALRQGFQEVSDGIGKWYARTE 488
P PP H + E H E E+I S K+ D+ A+ L++ +++ + +G Y R
Sbjct: 282 PNPPPHLDEEKIKQLHEELKEEIKSMAKDSEKDLEDAKKDLKEEIEQIKEEVG--YLRYM 339
Query: 489 QINEL 503
+ +L
Sbjct: 340 EAKQL 344
>SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)
Length = 458
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 37 ARRTRTSIPDKVPEAEDKPLNVVENL--SSEQELIDQANTIKDIDNSLRANKKEVVDIPV 210
A R+R D +A L + E SS ++LID I+D ++S +KE + +
Sbjct: 124 AMRSRGDTTDAEIKALKTQLKMAEETRDSSRRDLIDAHRKIRDAEDSKETLRKENLHVKR 183
Query: 211 KV-IVEEIKPSLKSDLKTLKCRMKM 282
+V +E K SL+ + L+ ++K+
Sbjct: 184 QVKDLEMEKQSLEKSVSDLREKVKL 208
>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
Length = 416
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 145 NTIKDIDNS--LRANKKEVVDIPVKVIVEEIKPSLKSDLKTLKCRMKMRKSRGL*SI*EI 318
N +K + +S +++ K + D+PV +EE D ++ K RGL ++ +
Sbjct: 315 NFMKQMKHSQEVKSRKDTLCDLPVSSSMEEKIAKSGMDFNKMRSVYKEGGERGLLTVLAL 374
Query: 319 PGPRS---IKSTKHRILNTTKMLKK 384
P S +K +K R+ T +++ K
Sbjct: 375 PPQYSQLNVKGSKPRVTKTIRIINK 399
>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
Length = 510
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 333 HQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 464
HQ H + HH D +KI S + + GF +SDG+
Sbjct: 73 HQNHHDHHHHHHHD-KKIDSKTSIATVAWMVIVSDGFHNLSDGL 115
>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
Length = 933
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Frame = +1
Query: 100 VVENLSSEQELIDQANTIKDIDNSLRANKKEVVD---------IPVKVIVEEIKPSLKSD 252
V E + S++E+ D N +KD+ +S+ KK+ D ++ V+E+K +L
Sbjct: 302 VKEAMPSKKEIPDMRNNLKDLKSSINEVKKQTDDSQNSHASQLSALEKTVDEMKKALNQQ 361
Query: 253 LKTLKCR 273
LK + R
Sbjct: 362 LKDVSNR 368
>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 540 APKFSWKCCKLPGAR*FARYERTIFQYRLTLPGSLDE 430
AP+ WKC KL G R ++ F++ L LDE
Sbjct: 74 APEQFWKCFKLWGQPVNVREQQDAFEFFCNLTDQLDE 110
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 540 APKFSWKCCKLPGAR*FARYERTIFQYRLTLPGSLDE 430
AP+ WKC KL G R ++ F++ L LDE
Sbjct: 66 APEQFWKCFKLWGQPVNVREQQDAFEFFCNLTDQLDE 102
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,889,830
Number of Sequences: 59808
Number of extensions: 336923
Number of successful extensions: 1257
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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