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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20969
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi...    32   0.42 
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi...    31   0.56 
At5g65910.1 68418.m08296 BSD domain-containing protein contains ...    31   0.73 
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai...    31   0.73 
At3g14490.1 68416.m01835 terpene synthase/cyclase family protein...    29   2.2  
At1g03830.1 68414.m00364 guanylate-binding family protein contai...    29   2.2  
At3g61390.2 68416.m06872 U-box domain-containing protein several...    29   3.9  
At1g68210.1 68414.m07792 two-component responsive regulator fami...    29   3.9  
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m...    29   3.9  
At1g56660.1 68414.m06516 expressed protein                             29   3.9  
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr...    29   3.9  
At1g12380.1 68414.m01431 expressed protein                             29   3.9  
At3g54670.1 68416.m06049 structural maintenance of chromosomes (...    28   5.2  
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains...    28   5.2  
At3g02125.1 68416.m00179 hypothetical protein                          28   6.8  
At2g45560.2 68415.m05666 cytochrome P450 family protein                28   6.8  
At2g45560.1 68415.m05665 cytochrome P450 family protein                28   6.8  
At2g28590.1 68415.m03474 protein kinase family protein contains ...    28   6.8  
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ...    27   9.0  
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila...    27   9.0  
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr...    27   9.0  
At1g17820.1 68414.m02206 expressed protein                             27   9.0  

>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 534

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -3

Query: 278 FIRHFNVFKSLFNDGLISSTITLTGMSTTSFLFARRLLSMSLIVLAWSMSSCSLD--KFS 105
           F+R  +++  +   G+I ST+T   M    F    RL     +V +     CS D   FS
Sbjct: 372 FLRAEDIYLEMLCKGIIPSTVTYNSM-VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFS 430

Query: 104 TTFKGLSSASGTLSGMEV 51
           T  KG   A     G+E+
Sbjct: 431 TLIKGYCKAGRVDDGLEL 448


>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 452

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 348 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 485
           T  P HH D  + VS +K+++ T   + ++ FQ V D  G+W  RT
Sbjct: 20  TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64


>At5g65910.1 68418.m08296 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 432

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 309 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 464
           L  P      +   Q P+H E+ E +++ +KND        R G  ++S  +
Sbjct: 64  LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115


>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
           Pfam profile: PF00628: PHD-finger
          Length = 704

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 505 WSSLICSVRAYHFPIPSDTSW 443
           WS+   S R YHF IP DT W
Sbjct: 100 WSNHFVSKRKYHFIIPIDTEW 120


>At3g14490.1 68416.m01835 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 601

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/76 (32%), Positives = 40/76 (52%)
 Frame = +3

Query: 387 VSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQAACNISKKISALKYKS*MKR 566
           V  +KNDINT E  + +G  EV+ G+   Y +   +++ +A   ++ KI +  YK  M+ 
Sbjct: 492 VFRIKNDINTFEQEMSRG--EVAKGL-NCYMKQHGVSKEEAIGEMN-KIYSNYYKIIMEE 547

Query: 567 YILLNQLTPSRPLLSR 614
           Y  L      RP+L R
Sbjct: 548 Y--LTTTAVPRPILVR 561


>At1g03830.1 68414.m00364 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 991

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +1

Query: 100 VVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLKTLKCRMK 279
           V E +++ +E + QA+T +D    LRA    V+D   K+I E+       + +    R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592

Query: 280 MRKS 291
           ++KS
Sbjct: 593 LKKS 596


>At3g61390.2 68416.m06872 U-box domain-containing protein several
           hypothetical proteins - Arabidopsis thaliana
          Length = 435

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
 Frame = +3

Query: 330 QHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINE-LQ 506
           + +E E     H E  +  +  + +DI         GF    + I +W+ R  + +  + 
Sbjct: 339 KREEEEASTSNHREPPQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPMIN 398

Query: 507 AACNISKKISALKYKS*MKRYILLNQLTPSRPLLSRK 617
                +  +  L  +S ++ ++ L +L  +RP   R+
Sbjct: 399 KRLPHTSLVPNLALRSAIQEWLQLRELL-NRPSACRE 434


>At1g68210.1 68414.m07792 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 663

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +1

Query: 76  EAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDL 255
           +   K L+++E    E  LI     +  ID+    N   + DIP+ +I  EIK    SDL
Sbjct: 43  DVASKALSMIEKQKKEIGLIIANIEMPHIDSHSFLNALLLKDIPLILINPEIKTKEPSDL 102

Query: 256 KTLKCRMKMRK 288
            T +    + K
Sbjct: 103 LTKRACFSLDK 113


>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
           myosin heavy chain (GI:4249703) [Rana catesbeiana];
           similar to smooth muscle myosin heavy chain SM2
           (GI:2352945) [Homo sapiens]
          Length = 476

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 32/127 (25%), Positives = 59/127 (46%)
 Frame = +1

Query: 103 VENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLKTLKCRMKM 282
           VE     + L+DQ N +K    SLR+ K E  +  ++  VEE+  + K  LK+LK   + 
Sbjct: 85  VEEKERVKGLMDQVNGMKHELESLRSQKDE-SEAKLEKKVEEVTET-KMQLKSLKEETEE 142

Query: 283 RKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 462
            ++R    I ++ G   +   +   L++  M  K+    +M    +K L  + S + + V
Sbjct: 143 ERNRLSEEIDQLKGENQMLHRRISELDSLHMEMKTKSAHEMEDASKK-LDTEVSDQKKLV 201

Query: 463 LENGTLV 483
            E   ++
Sbjct: 202 KEQDDII 208


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 73  PEAEDKPLNVVENLSSEQELIDQANTIKD---IDNSLRANKKEVVDIPVKVIVEEIKPSL 243
           PE ED+     E+ ++EQE+ D+A   K+     N  +A KKE V   V     + K   
Sbjct: 295 PEKEDEGKKTKEHDATEQEMDDEAADHKEGKKKKNKDKAKKKETVIDEVCEKETKDKDDD 354

Query: 244 KSDLKTLKCRMKMRKS 291
           + + K  K + K +KS
Sbjct: 355 EGETKQKKNKKKEKKS 370


>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
           protein similar to bHLH transcription factor GI:3757520
           from [Arabidopsis thaliana]
          Length = 226

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/96 (21%), Positives = 48/96 (50%)
 Frame = +1

Query: 61  PDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPS 240
           P + P+  DK   + + +    +  D+A  +KD+++SL+   KE+ D   K  + + K  
Sbjct: 95  PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151

Query: 241 LKSDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 348
           LK + + +  ++K  K++       +P P+++   +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187


>At1g12380.1 68414.m01431 expressed protein
          Length = 793

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +3

Query: 297 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 476
           PL  +R+         +  +PE  +D +K+++ + +  + A IAL +  +  ++G+   Y
Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667

Query: 477 ARTEQINE 500
           AR  Q+ E
Sbjct: 668 ARAVQMKE 675


>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
            family protein similar to SMC1 protein [Bos taurus]
            GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
            [Xenopus laevis] GI:3328231; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1257

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
 Frame = +1

Query: 49   RTSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDID------NSLRANKKEVVDIPV 210
            + SI DK+P+ E +  N++E +   +  + +A    ++D      N L     E+VD   
Sbjct: 744  KKSIKDKLPQLEQEERNIIEEIDRIKPELSKAIARTEVDKRKTEMNKLEKRMNEIVDRIY 803

Query: 211  K-----VIVEEIKPSLKSDLKTL--KCRMKMRKSRGL*SI---*EIPGPRSIKSTKHRIL 360
            K     V V  I+   ++ LKT   +   ++  S  L  +    E    R + S   +I 
Sbjct: 804  KDFSQSVGVPNIRVYEETQLKTAEKEAEERLELSNQLAKLKYQLEYEQNRDVGSRIRKIE 863

Query: 361  NTTKMLKKSFLPSKMTLTQRKSLFVKASRK 450
            ++   L+      + T+++RK   VK + +
Sbjct: 864  SSISSLETDLEGIQKTMSERKETAVKITNE 893


>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 475

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 58  IPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKK 189
           I   + E +  P +V ENL  +   ID   ++KD+  +L   KK
Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448


>At3g02125.1 68416.m00179 hypothetical protein
          Length = 355

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 539 AQIQKLNETLHFIKPADTIAAPSVEETPNKASFETIESGLKSLETNFNSGL 691
           A+I +  ET+H I   +++  P   + PN+   ETI         N NS +
Sbjct: 134 AEIPRFEETVHVITEINSVPLPPPVKKPNEYEKETIAEKEPYQVENSNSDI 184


>At2g45560.2 68415.m05666 cytochrome P450 family protein
          Length = 322

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 372 LRGVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQRFQITLQR 238
           + GVQD+V   +DAAG  D  N      F      ++ F++  +R
Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 372 LRGVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQRFQITLQR 238
           + GVQD+V   +DAAG  D  N      F      ++ F++  +R
Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252


>At2g28590.1 68415.m03474 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 424

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +1

Query: 328 RSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSSR 507
           R+ KS K     TTK     F P K+T+   +    + S  C  V   G +    +T   
Sbjct: 6   RTPKSNKRSDTKTTK--NNDFTPKKLTVNANRDKLTQPSSDCLKVSICGDVSKEIVTKKD 63

Query: 508 QLA 516
           QLA
Sbjct: 64  QLA 66


>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
           (UBP23) identical to GI:11993486
          Length = 859

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 466 ENGTLVPS-KLTSSRQLATFPRKFRRSNTK 552
           E+ T + S KLTS R+  T P+K R+  TK
Sbjct: 635 ESATSIESLKLTSERETLTTPKKTRKPKTK 664


>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
           to pre-mRNA splicing factor pre-mRNA splicing factor
           prp1 (SP:Q12381) [Fission yeast]
          Length = 1029

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 390 SSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQA 509
           + +++D+      LR+G + + D +  W A  E  NE  A
Sbjct: 458 AKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDA 497


>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 284

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 85  DKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLKTL 264
           DK   + + +   +EL  + N +K    +L    +E+     K  + E K SLKSD++ L
Sbjct: 40  DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97

Query: 265 KCRMKMR 285
             + + R
Sbjct: 98  NLQYQQR 104


>At1g17820.1 68414.m02206 expressed protein
          Length = 803

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +1

Query: 349 HRILNTTKMLKKSFLP-SKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSSRQLATFP 525
           H   + T+   KS  P +  +  Q + +   A+   + + E GTL  S    S Q+    
Sbjct: 623 HNTSHATEARSKSDKPPTSFSCLQAEQMQRTANATQKIISEIGTLASSSCAQSEQVQKAA 682

Query: 526 RKFRRSNTKVE 558
             F++ NT+ E
Sbjct: 683 TAFQKQNTEAE 693


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,546,336
Number of Sequences: 28952
Number of extensions: 239447
Number of successful extensions: 1013
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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