BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20969 (700 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi... 32 0.42 At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.56 At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.73 At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 31 0.73 At3g14490.1 68416.m01835 terpene synthase/cyclase family protein... 29 2.2 At1g03830.1 68414.m00364 guanylate-binding family protein contai... 29 2.2 At3g61390.2 68416.m06872 U-box domain-containing protein several... 29 3.9 At1g68210.1 68414.m07792 two-component responsive regulator fami... 29 3.9 At1g64320.1 68414.m07289 myosin heavy chain-related similar to m... 29 3.9 At1g56660.1 68414.m06516 expressed protein 29 3.9 At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 29 3.9 At1g12380.1 68414.m01431 expressed protein 29 3.9 At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 28 5.2 At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 28 5.2 At3g02125.1 68416.m00179 hypothetical protein 28 6.8 At2g45560.2 68415.m05666 cytochrome P450 family protein 28 6.8 At2g45560.1 68415.m05665 cytochrome P450 family protein 28 6.8 At2g28590.1 68415.m03474 protein kinase family protein contains ... 28 6.8 At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 27 9.0 At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 27 9.0 At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 27 9.0 At1g17820.1 68414.m02206 expressed protein 27 9.0 >At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing protein low similarity to fertility restorer [Petunia x hybrida] GI:22128587; contains Pfam profile PF01535: PPR repeat Length = 534 Score = 31.9 bits (69), Expect = 0.42 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Frame = -3 Query: 278 FIRHFNVFKSLFNDGLISSTITLTGMSTTSFLFARRLLSMSLIVLAWSMSSCSLD--KFS 105 F+R +++ + G+I ST+T M F RL +V + CS D FS Sbjct: 372 FLRAEDIYLEMLCKGIIPSTVTYNSM-VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFS 430 Query: 104 TTFKGLSSASGTLSGMEV 51 T KG A G+E+ Sbjct: 431 TLIKGYCKAGRVDDGLEL 448 >At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 452 Score = 31.5 bits (68), Expect = 0.56 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +3 Query: 348 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 485 T P HH D + VS +K+++ T + ++ FQ V D G+W RT Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64 >At5g65910.1 68418.m08296 BSD domain-containing protein contains Pfam profile PF03909: BSD domain Length = 432 Score = 31.1 bits (67), Expect = 0.73 Identities = 13/52 (25%), Positives = 23/52 (44%) Frame = +3 Query: 309 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 464 L P + Q P+H E+ E +++ +KND R G ++S + Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115 >At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains Pfam profile: PF00628: PHD-finger Length = 704 Score = 31.1 bits (67), Expect = 0.73 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -1 Query: 505 WSSLICSVRAYHFPIPSDTSW 443 WS+ S R YHF IP DT W Sbjct: 100 WSNHFVSKRKYHFIIPIDTEW 120 >At3g14490.1 68416.m01835 terpene synthase/cyclase family protein contains Pfam profile: PF01397 terpene synthase family Length = 601 Score = 29.5 bits (63), Expect = 2.2 Identities = 25/76 (32%), Positives = 40/76 (52%) Frame = +3 Query: 387 VSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQAACNISKKISALKYKS*MKR 566 V +KNDINT E + +G EV+ G+ Y + +++ +A ++ KI + YK M+ Sbjct: 492 VFRIKNDINTFEQEMSRG--EVAKGL-NCYMKQHGVSKEEAIGEMN-KIYSNYYKIIMEE 547 Query: 567 YILLNQLTPSRPLLSR 614 Y L RP+L R Sbjct: 548 Y--LTTTAVPRPILVR 561 >At1g03830.1 68414.m00364 guanylate-binding family protein contains Pfam domains PF02263: Guanylate-binding protein, N-terminal domain and PF02841: Guanylate-binding protein, C-terminal domain Length = 991 Score = 29.5 bits (63), Expect = 2.2 Identities = 18/64 (28%), Positives = 33/64 (51%) Frame = +1 Query: 100 VVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLKTLKCRMK 279 V E +++ +E + QA+T +D LRA V+D K+I E+ + + R + Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592 Query: 280 MRKS 291 ++KS Sbjct: 593 LKKS 596 >At3g61390.2 68416.m06872 U-box domain-containing protein several hypothetical proteins - Arabidopsis thaliana Length = 435 Score = 28.7 bits (61), Expect = 3.9 Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Frame = +3 Query: 330 QHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINE-LQ 506 + +E E H E + + + +DI GF + I +W+ R + + + Sbjct: 339 KREEEEASTSNHREPPQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPMIN 398 Query: 507 AACNISKKISALKYKS*MKRYILLNQLTPSRPLLSRK 617 + + L +S ++ ++ L +L +RP R+ Sbjct: 399 KRLPHTSLVPNLALRSAIQEWLQLRELL-NRPSACRE 434 >At1g68210.1 68414.m07792 two-component responsive regulator family protein / response regulator family protein contains Pfam profile: PF00072 response regulator receiver domain Length = 663 Score = 28.7 bits (61), Expect = 3.9 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = +1 Query: 76 EAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDL 255 + K L+++E E LI + ID+ N + DIP+ +I EIK SDL Sbjct: 43 DVASKALSMIEKQKKEIGLIIANIEMPHIDSHSFLNALLLKDIPLILINPEIKTKEPSDL 102 Query: 256 KTLKCRMKMRK 288 T + + K Sbjct: 103 LTKRACFSLDK 113 >At1g64320.1 68414.m07289 myosin heavy chain-related similar to myosin heavy chain (GI:4249703) [Rana catesbeiana]; similar to smooth muscle myosin heavy chain SM2 (GI:2352945) [Homo sapiens] Length = 476 Score = 28.7 bits (61), Expect = 3.9 Identities = 32/127 (25%), Positives = 59/127 (46%) Frame = +1 Query: 103 VENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLKTLKCRMKM 282 VE + L+DQ N +K SLR+ K E + ++ VEE+ + K LK+LK + Sbjct: 85 VEEKERVKGLMDQVNGMKHELESLRSQKDE-SEAKLEKKVEEVTET-KMQLKSLKEETEE 142 Query: 283 RKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 462 ++R I ++ G + + L++ M K+ +M +K L + S + + V Sbjct: 143 ERNRLSEEIDQLKGENQMLHRRISELDSLHMEMKTKSAHEMEDASKK-LDTEVSDQKKLV 201 Query: 463 LENGTLV 483 E ++ Sbjct: 202 KEQDDII 208 >At1g56660.1 68414.m06516 expressed protein Length = 522 Score = 28.7 bits (61), Expect = 3.9 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = +1 Query: 73 PEAEDKPLNVVENLSSEQELIDQANTIKD---IDNSLRANKKEVVDIPVKVIVEEIKPSL 243 PE ED+ E+ ++EQE+ D+A K+ N +A KKE V V + K Sbjct: 295 PEKEDEGKKTKEHDATEQEMDDEAADHKEGKKKKNKDKAKKKETVIDEVCEKETKDKDDD 354 Query: 244 KSDLKTLKCRMKMRKS 291 + + K K + K +KS Sbjct: 355 EGETKQKKNKKKEKKS 370 >At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family protein similar to bHLH transcription factor GI:3757520 from [Arabidopsis thaliana] Length = 226 Score = 28.7 bits (61), Expect = 3.9 Identities = 21/96 (21%), Positives = 48/96 (50%) Frame = +1 Query: 61 PDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPS 240 P + P+ DK + + + + D+A +KD+++SL+ KE+ D K + + K Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151 Query: 241 LKSDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 348 LK + + + ++K K++ +P P+++ + Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187 >At1g12380.1 68414.m01431 expressed protein Length = 793 Score = 28.7 bits (61), Expect = 3.9 Identities = 17/68 (25%), Positives = 35/68 (51%) Frame = +3 Query: 297 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 476 PL +R+ + +PE +D +K+++ + + + A IAL + + ++G+ Y Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667 Query: 477 ARTEQINE 500 AR Q+ E Sbjct: 668 ARAVQMKE 675 >At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC) family protein similar to SMC1 protein [Bos taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC protein) [Xenopus laevis] GI:3328231; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 1257 Score = 28.3 bits (60), Expect = 5.2 Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 16/150 (10%) Frame = +1 Query: 49 RTSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDID------NSLRANKKEVVDIPV 210 + SI DK+P+ E + N++E + + + +A ++D N L E+VD Sbjct: 744 KKSIKDKLPQLEQEERNIIEEIDRIKPELSKAIARTEVDKRKTEMNKLEKRMNEIVDRIY 803 Query: 211 K-----VIVEEIKPSLKSDLKTL--KCRMKMRKSRGL*SI---*EIPGPRSIKSTKHRIL 360 K V V I+ ++ LKT + ++ S L + E R + S +I Sbjct: 804 KDFSQSVGVPNIRVYEETQLKTAEKEAEERLELSNQLAKLKYQLEYEQNRDVGSRIRKIE 863 Query: 361 NTTKMLKKSFLPSKMTLTQRKSLFVKASRK 450 ++ L+ + T+++RK VK + + Sbjct: 864 SSISSLETDLEGIQKTMSERKETAVKITNE 893 >At3g28600.1 68416.m03570 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 475 Score = 28.3 bits (60), Expect = 5.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 58 IPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKK 189 I + E + P +V ENL + ID ++KD+ +L KK Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448 >At3g02125.1 68416.m00179 hypothetical protein Length = 355 Score = 27.9 bits (59), Expect = 6.8 Identities = 15/51 (29%), Positives = 24/51 (47%) Frame = +2 Query: 539 AQIQKLNETLHFIKPADTIAAPSVEETPNKASFETIESGLKSLETNFNSGL 691 A+I + ET+H I +++ P + PN+ ETI N NS + Sbjct: 134 AEIPRFEETVHVITEINSVPLPPPVKKPNEYEKETIAEKEPYQVENSNSDI 184 >At2g45560.2 68415.m05666 cytochrome P450 family protein Length = 322 Score = 27.9 bits (59), Expect = 6.8 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -2 Query: 372 LRGVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQRFQITLQR 238 + GVQD+V +DAAG D N F ++ F++ +R Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252 >At2g45560.1 68415.m05665 cytochrome P450 family protein Length = 512 Score = 27.9 bits (59), Expect = 6.8 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -2 Query: 372 LRGVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQRFQITLQR 238 + GVQD+V +DAAG D N F ++ F++ +R Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252 >At2g28590.1 68415.m03474 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 424 Score = 27.9 bits (59), Expect = 6.8 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = +1 Query: 328 RSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSSR 507 R+ KS K TTK F P K+T+ + + S C V G + +T Sbjct: 6 RTPKSNKRSDTKTTK--NNDFTPKKLTVNANRDKLTQPSSDCLKVSICGDVSKEIVTKKD 63 Query: 508 QLA 516 QLA Sbjct: 64 QLA 66 >At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative (UBP23) identical to GI:11993486 Length = 859 Score = 27.5 bits (58), Expect = 9.0 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 466 ENGTLVPS-KLTSSRQLATFPRKFRRSNTK 552 E+ T + S KLTS R+ T P+K R+ TK Sbjct: 635 ESATSIESLKLTSERETLTTPKKTRKPKTK 664 >At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar to pre-mRNA splicing factor pre-mRNA splicing factor prp1 (SP:Q12381) [Fission yeast] Length = 1029 Score = 27.5 bits (58), Expect = 9.0 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = +3 Query: 390 SSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQA 509 + +++D+ LR+G + + D + W A E NE A Sbjct: 458 AKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDA 497 >At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 284 Score = 27.5 bits (58), Expect = 9.0 Identities = 18/67 (26%), Positives = 32/67 (47%) Frame = +1 Query: 85 DKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLKTL 264 DK + + + +EL + N +K +L +E+ K + E K SLKSD++ L Sbjct: 40 DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97 Query: 265 KCRMKMR 285 + + R Sbjct: 98 NLQYQQR 104 >At1g17820.1 68414.m02206 expressed protein Length = 803 Score = 27.5 bits (58), Expect = 9.0 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = +1 Query: 349 HRILNTTKMLKKSFLP-SKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSSRQLATFP 525 H + T+ KS P + + Q + + A+ + + E GTL S S Q+ Sbjct: 623 HNTSHATEARSKSDKPPTSFSCLQAEQMQRTANATQKIISEIGTLASSSCAQSEQVQKAA 682 Query: 526 RKFRRSNTKVE 558 F++ NT+ E Sbjct: 683 TAFQKQNTEAE 693 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,546,336 Number of Sequences: 28952 Number of extensions: 239447 Number of successful extensions: 1013 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 973 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1011 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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