Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20968
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   3.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   3.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.7  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   6.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   6.2  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   8.2  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   8.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.2  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 274 CDEEMTCPRPCCRPEPGTL 218
           CDE +  P  CC+  PG L
Sbjct: 94  CDEPVHRPGRCCKTCPGDL 112


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 195 CRCAEGGRSVPGSGRQHGRGQVISSSQTDGI 287
           C C+E G ++PG        Q+I+ +  D I
Sbjct: 173 CFCSEDGTTIPGDLPSKDVPQMITITFDDAI 203


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 503 VPRAVPNLTFLTAKGACDMFSTPPATEILCAGQNVLS 393
           VP+ +P   F T   +  + S  PA+   C G N  S
Sbjct: 211 VPK-IPPAEFPTTSSSSALESPDPASRSSCLGSNTSS 246


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/25 (28%), Positives = 9/25 (36%)
 Frame = -3

Query: 568 PMGSPQYESESPAQRVSSKASWCPE 494
           P  +P  +   P Q       W PE
Sbjct: 415 PPSTPSADGSKPVQTTPKPGQWVPE 439


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 503 VPRAVPNLTFLTAKGACDMFSTPPATEILCAGQNVLS 393
           VP+ +P   F T   +  + S  PA+   C G N  S
Sbjct: 211 VPK-IPPAEFPTTSSSSALESPNPASRSSCLGSNTSS 246


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 314 SWYSSREAGARHQQTMRLWFP 376
           SWY+    GA+     ++W P
Sbjct: 27  SWYAGYHQGAQMGPEQQMWEP 47


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 314 SWYSSREAGARHQQTMRLWFP 376
           SWY+    GA+     ++W P
Sbjct: 27  SWYAGYHQGAQMGPEQQMWEP 47


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 491 VPNLTFLTAKGACDMFSTPPATEILCAGQNVLS 393
           +P   F T   +  + S  PA+   C G N  S
Sbjct: 3   IPPAEFPTTSSSSALESPNPASRSSCLGSNTSS 35


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 491 VPNLTFLTAKGACDMFSTPPATEILCAGQNVLS 393
           +P   F T   +  + S  PA+   C G N  S
Sbjct: 3   IPPAEFPTTSSSSALESPNPASRSSCLGSNTSS 35


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 281 RNLHATSRGAQSWYSSR 331
           RNL+ T R  + W+ +R
Sbjct: 278 RNLNLTERQVKIWFQNR 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,907
Number of Sequences: 336
Number of extensions: 3036
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)