Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20968
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 62 5e-11
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 28 1.2
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 27 2.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 2.8
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 2.8
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 3.7
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 26 3.7
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 26 4.9
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 6.5
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 8.6
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 62.5 bits (145), Expect = 5e-11
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Frame = +1
Query: 103 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGKSSLHHKLT 282
++IV A RTP G+FGG F + AT+L +IA GAL+ + P+ VD + +G +
Sbjct: 6 VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLGQ 65
Query: 283 ESTRHVTRRSKLVFLKRSRCSASTDYAALVSNRS*TALRTF*PAH-KISVAGGVENMSQA 459
R + L + C+ A + +T + +I VAGG E+MS A
Sbjct: 66 NPARQCALGAGLP--RSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNA 123
Query: 460 PFAVRNVRFGTALG 501
P+ RFG G
Sbjct: 124 PYYAPKNRFGAKYG 137
Score = 60.5 bits (140), Expect = 2e-10
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Frame = +3
Query: 252 GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSS 431
G V+S++ G R AL AG+P+ +N++C SG ++ + AQ I+TG ++
Sbjct: 56 GNVVSANL--GQNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVV 113
Query: 432 GGSREHVASA-LRGQKREVRHGSGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGIT 608
G E +++A K G+ + L GLSD+Y GLPMG AE + I
Sbjct: 114 AGGTESMSNAPYYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHSID 173
Query: 609 R 611
R
Sbjct: 174 R 174
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 478 VRFGTALGTNSPSKTPSGPDSRTHTAD 558
VR GT+LG SPS+ S SRT T +
Sbjct: 355 VRPGTSLGVRSPSRIQSTLSSRTTTGN 381
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 160 NTSATELQTIATVGALKEAGVSPAQVDSMVVGKSSLHHKLTESTRHVTRRSKLVFLKRS 336
NTS+T+ + ++ + P Q+DS+ K ++ E R +RR FL R+
Sbjct: 630 NTSSTQPSQVDSLVPTQLDSTIPTQIDSVQRNKDQDDEEILEERRE-SRRDSKTFLSRT 687
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 130 PFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMV 249
P G G + + T+ Q I + L V PAQ+DS++
Sbjct: 270 PSGPMGMKTGSVNDTQSQQITLMNVLASQNVPPAQIDSIM 309
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 401 VLSAVHDRLE-TRAA*SVDAEHRLLLRNTSFERRVTWRVDSVSL 273
+ V + ++ T+ + + ++ LLL N+ + +++W +D+V L
Sbjct: 185 IFDVVSEHIDITQTSDAPNSNRNLLLNNSMLQEKISWYLDTVEL 228
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 3.7
Identities = 21/64 (32%), Positives = 25/64 (39%)
Frame = +3
Query: 405 LTGAQDLSSGGSREHVASALRGQKREVRHGSGHQLAFEDTLWAGLSDSYCGLPMGMTAEK 584
L +Q SSG R H RG R G G F + W+ D Y L G+ K
Sbjct: 1272 LAESQRPSSG--RMHGRDMNRGDSR--MGGRGSNPPFSSSDWSNNKDGYARLGQGIRGLK 1327
Query: 585 LGAQ 596
G Q
Sbjct: 1328 SGTQ 1331
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 186 DSHCRCAEGGRSVPGSGRQHGRGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINR 356
DS C A G R+ G GR G + S+++ + P + ++ G Q +P+ + R
Sbjct: 51 DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVG--QAEPIQKVAR 105
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 485 SARLWAPTRLRRHPLGRTLGLILRTP 562
S RL APTR R L + ++LR P
Sbjct: 80 SGRLAAPTRKREFSLSNGVSVVLREP 105
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 176 SVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVNVELKY 39
SV+ +R +PN P P +A+ + N ++PV+ +L +
Sbjct: 755 SVSSNVRPINGSIPNAQPSVPGQAQPAAKANSVGNTSFPVDSKLAF 800
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 8.6
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +3
Query: 54 VNWIGIILNHVCF 92
+NWI I+L+++C+
Sbjct: 421 INWINILLSYICY 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,083
Number of Sequences: 5004
Number of extensions: 50674
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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