Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20968
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 67 1e-11
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 59 2e-09
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 55 4e-08
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 54 7e-08
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400... 30 1.7
01_03_0113 - 12647599-12648052,12648078-12648319 29 2.2
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 2.9
02_05_0052 - 25433204-25434151 29 2.9
03_02_0689 - 10423661-10424343,10425580-10425628 29 3.8
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 28 6.7
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 28 6.7
09_04_0386 + 17190016-17190170,17190234-17190318 27 8.9
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 27 8.9
04_04_0393 - 24894170-24894676,24895956-24896627,24897720-248979... 27 8.9
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022... 27 8.9
01_06_0252 + 27889652-27892450 27 8.9
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 66.9 bits (156), Expect = 1e-11
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Frame = +3
Query: 252 GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSS 431
G V+S++ G R AAL AG+P P +N++C SG ++++ +AQ I G D+
Sbjct: 67 GNVLSANL--GQAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVV 124
Query: 432 GGSREHVASALRGQKREVRHGS--GHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 605
G E +++A + R GS GH + + L GL D Y PMGM AE Q I
Sbjct: 125 AGGMESMSNAPK-YVAAARRGSRFGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSI 183
Query: 606 TR 611
+R
Sbjct: 184 SR 185
Score = 47.2 bits (107), Expect = 1e-05
Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 1/136 (0%)
Frame = +1
Query: 97 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGKSSLHHK 276
+ + IVG RTP G G + AT+L ++A AL+ A V PA V + +G +
Sbjct: 15 RDVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMGNVLSANL 74
Query: 277 LTESTRHVTRRSKLVFLKRSRCSASTDYAALVSNRS*TALRTF-*PAHKISVAGGVENMS 453
R + L C+ + A +T H + VAGG+E+MS
Sbjct: 75 GQAPARQAALGAGLP--DTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMS 132
Query: 454 QAPFAVRNVRFGTALG 501
AP V R G+ G
Sbjct: 133 NAPKYVAAARRGSRFG 148
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Frame = +3
Query: 252 GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSS 431
G V+S++ G R AAL AGIP +N++C SG ++ + +AQ IL G D+
Sbjct: 61 GNVLSANL--GQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVV 118
Query: 432 GGSREHVASALRGQKREVRHGS--GHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 605
G E +++A + E R GS GH + L GL D Y MG AE +
Sbjct: 119 AGGMESMSNAPK-YIAEARKGSRFGHDTLVDGMLKDGLWDVYGDFAMGNCAELCADNHAL 177
Query: 606 TR 611
TR
Sbjct: 178 TR 179
Score = 52.4 bits (120), Expect = 3e-07
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Frame = +1
Query: 97 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGKSSLHHK 276
+ + +VG RTP G F G + SAT+L +IA ALK A V PA V + G + L
Sbjct: 9 RDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFG-NVLSAN 67
Query: 277 LTESTRHVTRRSKLVFLKRSRCSASTDYAALVSNRS*TALRT-F*PAHKISVAGGVENMS 453
L ++ + CSA A + A ++ + I VAGG+E+MS
Sbjct: 68 LGQAPARQAALGAGI-PNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGMESMS 126
Query: 454 QAPFAVRNVRFGTALG 501
AP + R G+ G
Sbjct: 127 NAPKYIAEARKGSRFG 142
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/105 (31%), Positives = 51/105 (48%)
Frame = +3
Query: 297 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 476
R AA AG+P+ PV +NR C SG Q++ + A I G D+ G E ++ G +
Sbjct: 114 RAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMSVNAMGWE 173
Query: 477 REVRHGSGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
+V +D C LPMG+T+E + ++G+TR
Sbjct: 174 GQVNPKVNEVQKAQD----------CLLPMGITSENVAHRYGVTR 208
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 54.4 bits (125), Expect = 7e-08
Identities = 36/105 (34%), Positives = 53/105 (50%)
Frame = +3
Query: 297 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 476
R AA AG P P++ +NR C SG Q++ N A +I G D+ E +
Sbjct: 116 RMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMT------V 169
Query: 477 REVRHGSGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
+VR Q+ + L++ D C LPMG+T+E + +FGITR
Sbjct: 170 NQVRLDG--QVNPKVELFSQARD--CLLPMGLTSENVAKRFGITR 210
>03_02_0812 -
11439258-11439409,11439537-11439612,11439860-11440076,
11440150-11440350,11440673-11440872,11440955-11441075,
11441596-11441636,11441714-11441822,11442037-11442281,
11442382-11442496,11442970-11443064,11444279-11444535,
11444780-11444999,11445473-11445556
Length = 710
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 226 PAQVDSMVVGKSSLHHKLTESTRH 297
P +DS V+ +SS+HHKL S H
Sbjct: 112 PDTLDSSVIEQSSMHHKLNPSETH 135
>01_03_0113 - 12647599-12648052,12648078-12648319
Length = 231
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = -3
Query: 592 APSFSAVMPMGSPQYESESPAQRVSSKASWCPEPCRTSRF*PRRALATCSLLPPLLRSCA 413
AP+ S P SP + PA +S++ CP P RR+ S P + C
Sbjct: 39 APASSPPPPPASPPSAASPPATSTASRSRTCPPPLAL-----RRSQLRGSAAPVVNCICV 93
Query: 412 PVKMS 398
P+K S
Sbjct: 94 PLKHS 98
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 294 PRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILT 410
PR LK P+E I+R+C Q I++S Q I +
Sbjct: 249 PRTTKLKYRYPRESDHKNISRICREHLQEIISSQQKIFS 287
>02_05_0052 - 25433204-25434151
Length = 315
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 79 IMSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVG 255
+ SA+ G+ + GT G+F N ++ ELQ I +G + G+SP Q +V G
Sbjct: 217 VTSAARGGVEVKEGDVVVAGT-DGLFDNVTSEELQRIVAMG--RALGLSPKQTADVVAG 272
>03_02_0689 - 10423661-10424343,10425580-10425628
Length = 243
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 283 PSVCDEEMTCPRPCCRPEPGTLRPPSAHRQWLSSA 179
P V D+ + CPR PE G PPS R +++A
Sbjct: 136 PQVADDVL-CPRRTGIPESGRRHPPSPRRPTMTAA 169
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 204 AEGGRSVPGSGRQHGRGQVISSSQTD 281
A GG SVPG+G HG+ S S D
Sbjct: 197 AAGGPSVPGTGNGHGQSSGSSDSCRD 222
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +3
Query: 168 RDRTADDSHCRCAEGGRSVPGSGRQHGRGQVISSSQTDGIYTPRHAALKAGIPQEKPVL 344
R A S RC+ G P R H R ++ + G RH A + G+P + VL
Sbjct: 25 RSPPASGSLVRCSSSGNGAP---RDHRRRWQSPAAGSPGRVYQRHRAQQYGVPSRRWVL 80
>09_04_0386 + 17190016-17190170,17190234-17190318
Length = 79
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 189 SHCRCAEGGRSVPGSGRQHGRGQVISSSQTDG 284
S C + GRS P +G+ G+G+ + DG
Sbjct: 20 SPCHRHQSGRSQPATGQTEGKGRTEERGKRDG 51
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 230 AGDTPASFSAPTVAIVCSSVADVLRKTPPKVPNGVLLAPTMK 105
A TPA+ + P A+ SS ADV + + +G L T++
Sbjct: 129 ASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQ 170
>04_04_0393 -
24894170-24894676,24895956-24896627,24897720-24897956,
24898852-24899388,24899612-24899662,24900756-24900767
Length = 671
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/110 (20%), Positives = 41/110 (37%)
Frame = +3
Query: 198 RCAEGGRSVPGSGRQHGRGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQ 377
R A S +G G + + S++ + + A+ + + + CG
Sbjct: 60 RGASPEASTAATGDVAGANKAVVSTRAEATFPSCAVAVHNAVVSTRAEAIFSSSCGDADH 119
Query: 378 SIVNSAQDILTGAQDLSSGGSREHVASALRGQKREVRHGSGHQLAFEDTL 527
V+S + TG++ +SS S + A+A + S F D L
Sbjct: 120 KAVSSTV-LATGSETVSSSSSSDATATAAGSGTETISFSSSGSNEFHDEL 168
>01_06_0521 +
30001662-30001752,30001883-30001999,30002099-30002229,
30002320-30002370,30002639-30002689,30002864-30003007,
30003082-30003224,30003376-30003448,30003540-30003635,
30003737-30003835,30003905-30003958,30004032-30004155,
30004420-30004544,30004720-30004842,30004948-30005028
Length = 500
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 538 SPAQRVSSKASWCPEPCRTSRF*PRRALATCSL 440
SPA + WCP P R R R A+ S+
Sbjct: 38 SPAAAAAQAHGWCPSPRRVGRLRRRAGAASSSV 70
>01_06_0252 + 27889652-27892450
Length = 932
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 228 GSGRQHGRGQVIS-SSQTDGIYTPR 299
G+G HGRG++ S + TD +Y PR
Sbjct: 592 GTGFSHGRGRISSLRNSTDRLYFPR 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,260,211
Number of Sequences: 37544
Number of extensions: 439269
Number of successful extensions: 1636
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -