Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20968
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   1e-15
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   6e-11
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            33   0.14 
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             32   0.42 
SB_40587| Best HMM Match : DEP (HMM E-Value=7.4e-16)                   31   0.74 
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_19840| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_14170| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5)                  28   6.9  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.1  
SB_17687| Best HMM Match : Ank (HMM E-Value=5.6e-40)                   27   9.1  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      27   9.1  
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 52.8 bits (121), Expect(2) = 1e-15
 Identities = 26/64 (40%), Positives = 36/64 (56%)
 Frame = +3

Query: 207 EGGRSVPGSGRQHGRGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIV 386
           E G+  P +      G V+  +  D  Y  RH  +K+ +P   P L +NRLCGSGFQSI+
Sbjct: 739 ESGKVDPATVDSVIFGNVLQCAN-DAAYVARHIGIKSKVPVTTPALTVNRLCGSGFQSII 797

Query: 387 NSAQ 398
           + AQ
Sbjct: 798 SGAQ 801



 Score = 47.6 bits (108), Expect(2) = 1e-15
 Identities = 23/39 (58%), Positives = 28/39 (71%)
 Frame = +3

Query: 495 SGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
           SG Q+  EDTLW GL+D   GLPMG+TAE L  ++ ITR
Sbjct: 798 SGAQM--EDTLWQGLTDMLPGLPMGITAENLAEKYNITR 834



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = +1

Query: 118 AKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGK-SSLHHKLTESTR 294
           AKRT FG FGG  ++ +AT L   A+V A++   V PA VDS++ G      +      R
Sbjct: 709 AKRTAFGAFGGRLKDFTATVLGEHASVAAMESGKVDPATVDSVIFGNVLQCANDAAYVAR 768

Query: 295 HVTRRSKL 318
           H+  +SK+
Sbjct: 769 HIGIKSKV 776


>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 38/120 (31%), Positives = 59/120 (49%)
 Frame = +3

Query: 252 GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSS 431
           GQV+++ Q  G    R AA+ AGIP   P  G+N LCGSG +++    Q +  G  ++  
Sbjct: 60  GQVLTAGQGQG--PARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVV 117

Query: 432 GGSREHVASALRGQKREVRHGSGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
            G +E ++ A            G     +  L  GL DS+    MG+TAE +  Q+ ++R
Sbjct: 118 AGGQESMSQAPHCCHMRPALKFGDMTLIDTMLKDGLMDSFNNYHMGITAENVAKQWEVSR 177



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +1

Query: 97  KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGK 258
           + + I  A RTP G+  G   +  A EL +I    AL  A +SP  V  +++G+
Sbjct: 8   RDVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQ 61


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 321 IPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQ 419
           +P   P   IN++C SG +SI+ +AQ ++ G+Q
Sbjct: 26  LPISTPCTTINKVCASGMKSIMAAAQSLMCGSQ 58


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -3

Query: 319 PALSAA*RGV*IPSVCDEEMT--CPRPCC---RPEPGTLRPPSAH 200
           P  + A +G   P++CD +    CPR CC   RP+   +  PS H
Sbjct: 694 PRKAMAKKGNTCPAICDTQCAPVCPRRCCGPRRPQAAIVHRPSVH 738


>SB_40587| Best HMM Match : DEP (HMM E-Value=7.4e-16)
          Length = 625

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 378 SIVNSAQDILTGAQDLSSGGSREHVASALRGQKREVRHGSGHQLAFEDTLW-AGLSDSYC 554
           + VNS +D+L  +QD+S+G          RG+ R  +     Q+A  DT+  +  S S  
Sbjct: 31  AFVNSPEDVLESSQDVSNGILSTSTGGKPRGRGR--KKARARQIAITDTMEDSNNSTSET 88

Query: 555 GLPMGMTAE 581
           G P   T E
Sbjct: 89  GTPDTTTKE 97


>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
 Frame = -3

Query: 502 CPEPCRTSRF*PRRALATCSLLPPLLRSCAPVKMS*ALFTIDWKPEPHSLLMPSTGFS*G 323
           CP PC      P   L  C+  PPL  + +P   +    T  + P PH LL P       
Sbjct: 18  CPTPCYGPV--PHPLLRPCA--PPLATALSPPPATALCPTPCYGPVPHPLLRPC------ 67

Query: 322 IPALSAA*RGV*IPSVC---DEEMTCPRPCCRPEP 227
           +P  + A     +P  C        CP PC  P P
Sbjct: 68  VPPPATALVPHPLPRPCAPPPATALCPTPCYGPVP 102


>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
 Frame = +3

Query: 228 GSGRQHGRGQVISSSQ----TDGIYTPRHAALKAGIPQEKPVLGINRLCGS 368
           G GR     Q + SS      D    P HA  K   P+E  + G+ R  GS
Sbjct: 5   GRGRGRSTAQTVDSSPPRPGADSAKAPIHADQKTASPKESDLTGLKRALGS 55


>SB_19840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 171 DRTADDSHCRCAEGGRSVPGSGRQHGRGQVISSSQTDGIYTPRHAALKAGIPQE 332
           D  + DSH    +G  S P + R  G      +++ DG+ +  HA    G+P +
Sbjct: 23  DGMSSDSHATRGDGMSSDPHATRDDGMPSDPHATRDDGMSSDPHATRDDGMPSD 76



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 171 DRTADDSHCRCAEGGRSVPGSGRQHGRGQVISSSQTDGIYTPRHAALKAGIPQE 332
           D    D H    +G  S P + R  G      +++ DG+ +  HA    G+P E
Sbjct: 83  DGMPSDPHATRDDGMPSDPHATRDDGMSSDSHATRGDGVSSDSHATRGDGVPSE 136


>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 194 VAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYT 66
           VA+  S+V+ V + TPPK+P   L   T+  PL  A +++ +T
Sbjct: 66  VALKESNVSPVPKTTPPKIPEEDLRPVTLTSPL--AKVMEGFT 106


>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 418 KISVAGGVENMSQAPFAVRNVRFGTALGTNSPSKTPSGPDSRTHTA 555
           +I+    V     A FA ++++  TA+ T + SKT + P SRT T+
Sbjct: 111 RITAKQNVPPSRSAQFAGQSIQI-TAIATKTKSKTTTTPTSRTPTS 155


>SB_14170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 699

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +3

Query: 99  RDFHRGR*KDAVWYLRRSLPQHIRDRTADDSHCRCAEGGRSVPGSGRQHGRGQVISSSQT 278
           R++     K    Y RRS  QH+R+     S  +     RS     RQH R   ++SS++
Sbjct: 103 REYGLASSKSQYKYTRRSYRQHVREYGLASSKSQYKYTRRSY----RQHAREYKLASSKS 158

Query: 279 DGIYTPR 299
              YT R
Sbjct: 159 QYKYTRR 165



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +3

Query: 99  RDFHRGR*KDAVWYLRRSLPQHIRDRTADDSHCRCAEGGRSVPGSGRQHGRGQVISSSQT 278
           R++     K    Y RRS  QH+R+     S  +     RS     RQH R   ++SS++
Sbjct: 34  REYGLASSKSQYKYTRRSYRQHVREYGLASSKSQYKYTRRSY----RQHAREYGLASSKS 89

Query: 279 DGIYTPR 299
              YT R
Sbjct: 90  QYKYTRR 96


>SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5)
          Length = 208

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +3

Query: 198 RCAEGGRSVPGSGRQHGRGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSG 371
           R A+ GR + GSGR  GRG++  S    G+    H A    +     + G  R+ G+G
Sbjct: 12  RMADSGR-MAGSGRMAGRGRMADSG---GMAGSGHMAGSGRMAGSGRMAGSGRMAGTG 65


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 390  SAQDILTGAQDLSSGGSREHVASALRGQKREVRHGSGHQL 509
            S   I  G++D  + GSR+H+     G + ++ HGS  QL
Sbjct: 4526 SRDRINRGSRDHINHGSRDHIN---HGSRDQINHGSSEQL 4562


>SB_17687| Best HMM Match : Ank (HMM E-Value=5.6e-40)
          Length = 277

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 184 TIATVGALKEAGVSPAQVDSMVVGKSSLHHKLTESTRHVTR 306
           ++ T+  L E G  P   D    G ++LHH + ++  HVT+
Sbjct: 4   SVNTIKRLLELGADPETPDHH--GNTALHHAVLQANVHVTK 42


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 126 DAVWYLRRSLPQHIRDRTADDSHCRCAEGGRSVPGSGRQHGRGQVISSSQT 278
           D + Y +R L +  R   +D  H R      +   +G+ HG+GQ++  + T
Sbjct: 137 DRIDYRQRQLTRLDRHTDSDSYHGRTDTRTGTATMTGQTHGQGQLLDRTDT 187


>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 433 PLLRSCAPVKMS*ALFTIDWKPEPHSLLMP 344
           PLLR CAP   +    T  + P PH LL P
Sbjct: 840 PLLRPCAPPPATALCPTPCYGPVPHHLLRP 869



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 433 PLLRSCAPVKMS*ALFTIDWKPEPHSLLMP 344
           PLLR CAP   +    T  + P PH LL P
Sbjct: 890 PLLRPCAPPPATALCPTPCYGPVPHPLLRP 919



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 433  PLLRSCAPVKMS*ALFTIDWKPEPHSLLMP 344
            PLLR CAP   +    T  + P PH LL P
Sbjct: 915  PLLRPCAPPPATALCPTPCYGPVPHPLLRP 944


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,995,579
Number of Sequences: 59808
Number of extensions: 450090
Number of successful extensions: 1258
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)