Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20968
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    26   0.25 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.77 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.1  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   5.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.5  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 411 RSKCPERCSRSIGNQSRIVC*CRAPASLEEYQL*APRDVA 292
           R+K  E+  R +  ++ + C CR   S+EEY +  P+++A
Sbjct: 94  RAKPGEKKFRKVITKAPLECMCRPCTSVEEYAI-IPQEIA 132


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 191  AIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVN 54
            A+V SS + ++   PP  PNGV+   T+      A+   +   P N
Sbjct: 1188 ALVMSSESILVSWRPPSQPNGVITQYTVYTKADNAEEPTSQKVPPN 1233


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 274 CDEEMTCPRPC 242
           CD EMTCP  C
Sbjct: 755 CDCEMTCPAGC 765


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 263  DDLPTTMLST*AGDTPASFSAPTVAIVCSSVADVLRKTPPKVPNGVL 123
            D +PTT+      +      A    +V S  A  +   PP  PNG++
Sbjct: 1198 DGVPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEPNGII 1244



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 213 GRSVPGSGRQ 242
           GR +PG+GRQ
Sbjct: 371 GRQLPGTGRQ 380


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 263  DDLPTTMLST*AGDTPASFSAPTVAIVCSSVADVLRKTPPKVPNGVL 123
            D +PTT+      +      A    +V S  A  +   PP  PNG++
Sbjct: 1194 DGVPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEPNGII 1240



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 213 GRSVPGSGRQ 242
           GR +PG+GRQ
Sbjct: 371 GRQLPGTGRQ 380


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 284 NLHATSRGAQSWYSSREAGARHQQ 355
           +LH T    + W+ +R A A+  Q
Sbjct: 45  SLHLTETQVKIWFQNRRAKAKRLQ 68


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 213 GRSVPGSGRQH 245
           G S PG+GR+H
Sbjct: 392 GSSTPGTGREH 402


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 344 EHRLLLRNTSFERRVTWRVDSV 279
           E RL  +NT+FE ++ +  D+V
Sbjct: 457 EKRLTKQNTAFENQLQFVSDAV 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,952
Number of Sequences: 438
Number of extensions: 3578
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)