Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20968
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative ... 59 2e-09
At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative ... 59 2e-09
At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative ... 57 1e-08
At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative ... 56 2e-08
At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative ... 56 2e-08
At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative ... 56 2e-08
At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative ... 53 1e-07
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto... 50 9e-07
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto... 50 9e-07
At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative ... 45 5e-05
At1g53050.1 68414.m06007 protein kinase family protein contains ... 31 0.80
At1g63850.1 68414.m07227 PRLI-interacting factor-related similar... 30 1.1
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At5g49680.1 68418.m06151 cell expansion protein, putative simila... 28 4.2
At2g31380.1 68415.m03835 zinc finger (B-box type) family protein... 28 4.2
At1g52640.1 68414.m05944 pentatricopeptide (PPR) repeat-containi... 28 5.6
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 27 7.4
At1g16270.1 68414.m01948 protein kinase family protein contains ... 27 7.4
At4g14970.1 68417.m02301 hypothetical protein 27 9.8
At1g06040.2 68414.m00633 zinc finger (B-box type) family protein... 27 9.8
At1g06040.1 68414.m00632 zinc finger (B-box type) family protein... 27 9.8
>At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 403
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Frame = +3
Query: 252 GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSS 431
G V+S++ G R AAL AGIP +N++C SG ++++ +AQ I G D+
Sbjct: 63 GNVLSANL--GQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVV 120
Query: 432 GGSREHVASALRGQKREVRHGS--GHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 605
G E +++ + E R GS GH + L GL D Y MG AE +F I
Sbjct: 121 AGGMESMSNTPK-YLAEARKGSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQI 179
Query: 606 TR 611
TR
Sbjct: 180 TR 181
Score = 50.0 bits (114), Expect = 1e-06
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Frame = +1
Query: 85 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGKSS 264
S + + + IVG RTP G F G + AT+L ++A ALK A V PA V +V G +
Sbjct: 7 SVNPRDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFG-NV 65
Query: 265 LHHKLTESTRHVTR-----RSKLVFLKRSRCSASTDYAALVSNRS*TALRTF*PAHKISV 429
L L ++ + ++ ++ AS A +++ +S + + V
Sbjct: 66 LSANLGQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQL-----GINDVVV 120
Query: 430 AGGVENMSQAPFAVRNVRFGTALGTNS 510
AGG+E+MS P + R G+ G +S
Sbjct: 121 AGGMESMSNTPKYLAEARKGSRFGHDS 147
>At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 398
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Frame = +3
Query: 252 GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSS 431
G V+S++ G R AAL AGIP +N++C SG ++++ +AQ I G D+
Sbjct: 58 GNVLSANL--GQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVV 115
Query: 432 GGSREHVASALRGQKREVRHGS--GHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 605
G E +++ + E R GS GH + L GL D Y MG AE +F I
Sbjct: 116 AGGMESMSNTPK-YLAEARKGSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQI 174
Query: 606 TR 611
TR
Sbjct: 175 TR 176
Score = 49.6 bits (113), Expect = 2e-06
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Frame = +1
Query: 82 MSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGKS 261
M+ + IVG RTP G F G + AT+L ++A ALK A V PA V +V G +
Sbjct: 1 MNVDESDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFG-N 59
Query: 262 SLHHKLTESTRHVTR-----RSKLVFLKRSRCSASTDYAALVSNRS*TALRTF*PAHKIS 426
L L ++ + ++ ++ AS A +++ +S + +
Sbjct: 60 VLSANLGQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQL-----GINDVV 114
Query: 427 VAGGVENMSQAPFAVRNVRFGTALGTNS 510
VAGG+E+MS P + R G+ G +S
Sbjct: 115 VAGGMESMSNTPKYLAEARKGSRFGHDS 142
>At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 406
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +3
Query: 297 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 476
R AAL AGIP IN++C +G +S++ ++Q I G D+ G E +++ +
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPKYLP 137
Query: 477 REVRHGS--GHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
R GS GH + + GL D Y MG+ E Q+ ITR
Sbjct: 138 DASRRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITR 184
Score = 44.4 bits (100), Expect = 6e-05
Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Frame = +1
Query: 85 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGKSS 264
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + G
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 265 LHHKLTESTRHVTRRSKLVF-----LKRSRCSASTDYAALVSNRS*TALRTF*PAHKISV 429
+ R + + + C+A L S L + I V
Sbjct: 69 TANLGQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGL------NDIVV 122
Query: 430 AGGVENMSQAPFAVRNV-RFGTALG 501
AGG+E+MS P + + R G+ LG
Sbjct: 123 AGGMESMSNVPKYLPDASRRGSRLG 147
>At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 55.6 bits (128), Expect = 2e-08
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = +3
Query: 297 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 476
R AAL AGIP IN++C +G +S++ ++Q I G D+ G E +++ +
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPK-YL 136
Query: 477 REVRHGS--GHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
+ R GS GH + + GL D Y MG+ E Q+ ITR
Sbjct: 137 PDARRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITR 183
Score = 48.8 bits (111), Expect = 3e-06
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Frame = +1
Query: 85 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGKSS 264
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + G
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 265 LHHKLTESTRHVTRRSKLVF-----LKRSRCSASTDYAALVSNRS*TALRTF*PAHKISV 429
+ R + + + C+A L S L + I V
Sbjct: 69 TANLGQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGL------NDIVV 122
Query: 430 AGGVENMSQAPFAVRNVRFGTALG 501
AGG+E+MS P + + R G+ LG
Sbjct: 123 AGGMESMSNVPKYLPDARRGSRLG 146
>At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 415
Score = 55.6 bits (128), Expect = 2e-08
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = +3
Query: 297 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 476
R AAL AGIP IN++C +G +S++ ++Q I G D+ G E +++ +
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPK-YL 136
Query: 477 REVRHGS--GHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
+ R GS GH + + GL D Y MG+ E Q+ ITR
Sbjct: 137 PDARRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITR 183
Score = 48.8 bits (111), Expect = 3e-06
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Frame = +1
Query: 85 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGKSS 264
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + G
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 265 LHHKLTESTRHVTRRSKLVF-----LKRSRCSASTDYAALVSNRS*TALRTF*PAHKISV 429
+ R + + + C+A L S L + I V
Sbjct: 69 TANLGQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGL------NDIVV 122
Query: 430 AGGVENMSQAPFAVRNVRFGTALG 501
AGG+E+MS P + + R G+ LG
Sbjct: 123 AGGMESMSNVPKYLPDARRGSRLG 146
>At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 55.6 bits (128), Expect = 2e-08
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = +3
Query: 297 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 476
R AAL AGIP IN++C +G +S++ ++Q I G D+ G E +++ +
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPK-YL 136
Query: 477 REVRHGS--GHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
+ R GS GH + + GL D Y MG+ E Q+ ITR
Sbjct: 137 PDARRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITR 183
Score = 48.8 bits (111), Expect = 3e-06
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Frame = +1
Query: 85 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGKSS 264
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + G
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 265 LHHKLTESTRHVTRRSKLVF-----LKRSRCSASTDYAALVSNRS*TALRTF*PAHKISV 429
+ R + + + C+A L S L + I V
Sbjct: 69 TANLGQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGL------NDIVV 122
Query: 430 AGGVENMSQAPFAVRNVRFGTALG 501
AGG+E+MS P + + R G+ LG
Sbjct: 123 AGGMESMSNVPKYLPDARRGSRLG 146
>At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 443
Score = 53.2 bits (122), Expect = 1e-07
Identities = 34/105 (32%), Positives = 51/105 (48%)
Frame = +3
Query: 297 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 476
R AA AG P+ P+ +NR C SG Q++ + A I G D+ G E + + RG K
Sbjct: 109 RMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPRGWK 168
Query: 477 REVRHGSGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
V + + FE C LPMG+T+E + +F ++R
Sbjct: 169 GSV---NPNVKKFEQA-------HNCLLPMGITSENVAHRFNVSR 203
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 103 IFIVGAKRTPF-GTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVG 255
+ IV A+RT G F++T EL +++ V+P++V +VVG
Sbjct: 44 VVIVAAQRTALCKAKRGSFKDTFPDELLASVLRALIEKTNVNPSEVGDIVVG 95
>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 457
Score = 50.4 bits (115), Expect = 9e-07
Identities = 34/105 (32%), Positives = 49/105 (46%)
Frame = +3
Query: 297 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 476
R AA AG P PV +NR C SG Q++ + A I G D+ G E +++
Sbjct: 116 RVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMST------ 169
Query: 477 REVRHGSGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
+ G H + D C LPMG+T+E + +FG+TR
Sbjct: 170 DHIPGGGFHGSNPRAQDFPKARD--CLLPMGITSENVAERFGVTR 212
>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 414
Score = 50.4 bits (115), Expect = 9e-07
Identities = 34/105 (32%), Positives = 49/105 (46%)
Frame = +3
Query: 297 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 476
R AA AG P PV +NR C SG Q++ + A I G D+ G E +++
Sbjct: 73 RVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMST------ 126
Query: 477 REVRHGSGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
+ G H + D C LPMG+T+E + +FG+TR
Sbjct: 127 DHIPGGGFHGSNPRAQDFPKARD--CLLPMGITSENVAERFGVTR 169
>At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 462
Score = 44.8 bits (101), Expect = 5e-05
Identities = 32/105 (30%), Positives = 48/105 (45%)
Frame = +3
Query: 297 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 476
R AA AG P+ V +NR C SG Q++ + A I G D+ G E + + +
Sbjct: 117 RMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWE 176
Query: 477 REVRHGSGHQLAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITR 611
V A + A C LPMG+T+E + +FG++R
Sbjct: 177 GSVNP------AVKKFAQA----QNCLLPMGVTSENVAQRFGVSR 211
>At1g53050.1 68414.m06007 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 694
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 216 RSVPGSGRQHGRGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGS 368
RS GR++ + SS D P AA + G PQ++ G+ RL GS
Sbjct: 549 RSASAKGRRNYQDSQKVSSIADYSAMPGFAATRTGAPQQETCRGMTRLPGS 599
>At1g63850.1 68414.m07227 PRLI-interacting factor-related similar to
PRLI-interacting factor G (GI:11139264) [Arabidopsis
thaliana]; contains Prosite PS00037: Myb DNA-binding
domain repeat signature 1
Length = 548
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 206 SAPTVAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVN 54
S+PT+ + +S AD + K P ++ NGVL +P+ + A T VN
Sbjct: 55 SSPTLFEMMASEADTIGKVPVQIHNGVLPSPSSSSSSSSAAATAARTTNVN 105
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 417 QDLSSGGSREHVASALRGQKREVRHGSGHQLAF 515
++ S+G E+V +A RG++ EVR G+G + +F
Sbjct: 327 RETSNGNVVENVGNADRGREDEVRSGNGRRFSF 359
>At5g49680.1 68418.m06151 cell expansion protein, putative similar to
SABRE [Arabidopsis thaliana] GI:719291
Length = 1378
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 405 LTGAQDLSSGGSREHV-ASALRGQKREVRHGSGHQLAFEDTL 527
L A DL G + + +S +RG RE+R S ++E+T+
Sbjct: 1057 LLAASDLGQGSKNQSLKSSTIRGSGRELRRTSSFDRSWEETV 1098
>At2g31380.1 68415.m03835 zinc finger (B-box type) family protein /
salt tolerance-like protein (STH) contains Pfam profile
PF00643: B-box zinc finger; identical to cDNA B-box zinc
finger protein STH GI:12698721, SP|Q9SID1 Salt
tolerance-like protein (Arabidopsis thaliana)
Length = 238
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 455 CDMFSTPPATEILCAGQNVLSAVHDRLETRAA*SVDAEH-RLLLRNTS 315
CD+ PAT I CA + L A D +E AA + ++H RL L + S
Sbjct: 5 CDVCEKAPATLICCADEAALCAKCD-VEVHAANKLASKHQRLFLDSLS 51
>At1g52640.1 68414.m05944 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 523
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 351 NRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQKREV 485
NRL G G +V D+L G + SS S + +A +RG++R +
Sbjct: 462 NRLVGWGQMDVV----DVLAGKMERSSSCSVQDMAVEMRGKRRRL 502
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 604 IPNWAPSFSAVMPMGSPQYESESPA 530
IP+ AP FSA +P+G Q S + A
Sbjct: 240 IPSQAPPFSAPLPVGGAQQPSHADA 264
>At1g16270.1 68414.m01948 protein kinase family protein contains
PF|00069 Eukaryotic protein kinase domain. ESTs
gb|H37741, gb|T43005 and gb|AI100340 come from this gene
Length = 1147
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 187 IATVGALKEA-GVSPAQVDSMVVGKSSLHHKLTESTRHVTRRSKLV 321
+A G +K+ G + A V +V SL H L RH+ RR +L+
Sbjct: 927 VAFYGVVKDGPGATLATVTEYMVD-GSLRHVLVRKDRHLDRRKRLI 971
>At4g14970.1 68417.m02301 hypothetical protein
Length = 1286
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 158 RKTPPKVPNGVLLAPTMKIPLTEADMIQ 75
RK PP P+ AP++KIP + + ++
Sbjct: 6 RKKPPPPPSSSSAAPSLKIPQPQKESVE 33
>At1g06040.2 68414.m00633 zinc finger (B-box type) family protein /
salt-tolerance protein (STO) identical to SP|Q96288
Salt-tolerance protein [Arabidopsis thaliana]; contains
Pfam profile PF00643: B-box zinc finger
Length = 177
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 455 CDMFSTPPATEILCAGQNVLSAVHDRLETRAA*SVDAEHRLLLRNT 318
CD+ PAT I CA + L D +E AA + ++H+ L N+
Sbjct: 5 CDVCEKAPATVICCADEAALCPQCD-IEIHAANKLASKHQRLHLNS 49
>At1g06040.1 68414.m00632 zinc finger (B-box type) family protein /
salt-tolerance protein (STO) identical to SP|Q96288
Salt-tolerance protein [Arabidopsis thaliana]; contains
Pfam profile PF00643: B-box zinc finger
Length = 248
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 455 CDMFSTPPATEILCAGQNVLSAVHDRLETRAA*SVDAEHRLLLRNT 318
CD+ PAT I CA + L D +E AA + ++H+ L N+
Sbjct: 5 CDVCEKAPATVICCADEAALCPQCD-IEIHAANKLASKHQRLHLNS 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,625,758
Number of Sequences: 28952
Number of extensions: 297729
Number of successful extensions: 941
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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