Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20967
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    81   1e-16
SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    73   4e-14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.1  
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   3.6  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    25   8.3  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 35/53 (66%), Positives = 43/53 (81%)
 Frame = -1

Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
           LF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQF 78


>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 36/73 (49%), Positives = 48/73 (65%)
 Frame = +3

Query: 489 KKSYRTCYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 668
           +K       V ++  ++  R  YKNKKY PLDLR KKTRA+R+ALT +E   KT K+I+K
Sbjct: 50  RKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKK 109

Query: 669 KSLFPPRVYAVKA 707
           +  FP R YA+KA
Sbjct: 110 ERYFPLRKYALKA 122



 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 22/58 (37%), Positives = 28/58 (48%)
 Frame = +1

Query: 349 VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVTLCI 522
           +K  ELR +                 +LRV K+ GG  SKLSKI+  RK IAR+   I
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVI 60


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +3

Query: 498 YRTCY-IVYHQKMKVN---LRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 641
           Y  CY  VYHQK K+N   L    + +K  PL+ R      + K +T    K
Sbjct: 72  YVMCYNTVYHQKTKINDKLLSETEQLRKIYPLESRVFPKPTIVKEITNERTK 123


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +3

Query: 507 CYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 677
           C  V+   + V LR H   +  +   +    +  +    + H AK+K R+ +R   L
Sbjct: 99  CSYVHEIPLGVPLRLHQSKQALRAKAIAESSSTKLESRKSAHNAKVKQRQRLRASGL 155


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 719 IIYSSFNGIDSRW---EERFLSDLFPRLDLCF 633
           +++ +F  + + W   E  FLS +FPR   CF
Sbjct: 246 VVFGAFPSLHAGWAMLEALFLSHVFPRYRFCF 277


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/64 (23%), Positives = 24/64 (37%)
 Frame = -3

Query: 220 KG*AQEDRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSD 41
           KG  Q+    S  +E ++L     H                P P P    S + ESAP +
Sbjct: 280 KGAIQDSSIQSYLDEEEKLSRELDHKTKDASSTNDSQTTPLPPPPPVAVNSTNDESAPQN 339

Query: 40  QPIL 29
           + ++
Sbjct: 340 EELV 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,429
Number of Sequences: 5004
Number of extensions: 47221
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)