SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20967
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    84   1e-16
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    83   3e-16
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...    83   3e-16
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    54   1e-07
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    42   7e-04
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    31   0.93 
07_03_1414 - 26403361-26403969                                         31   1.2  
07_03_1422 + 26462871-26463434,26463772-26463897                       29   2.8  
07_03_1413 - 26396426-26396890                                         29   2.8  
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150...    29   3.8  
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548...    29   5.0  
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813...    28   6.6  
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548...    28   6.6  
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618...    28   6.6  
02_02_0061 + 6468190-6471046,6471318-6471736                           28   6.6  
01_01_1202 - 9681836-9683146                                           28   8.7  

>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = -1

Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
           LFEKRPK F IG  + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQF
Sbjct: 25  LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQF 77


>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 34/53 (64%), Positives = 43/53 (81%)
 Frame = -1

Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
           LFEKRPK F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQF
Sbjct: 24  LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQF 76


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 34/53 (64%), Positives = 43/53 (81%)
 Frame = -1

Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
           LFEKRPK F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQF
Sbjct: 8   LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQF 60


>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
 Frame = +3

Query: 516 VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKH------------------EAK 641
           V  QK +  LR  YK K   PLDLR KKTRA+R+ LTKH                  +  
Sbjct: 60  VISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLS 119

Query: 642 IKTRKEIRKKSLFPPRVYAVKA 707
           +KT +E +++  FP R YA+KA
Sbjct: 120 LKTEREKKREKYFPMRKYAIKA 141



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/77 (38%), Positives = 44/77 (57%)
 Frame = +1

Query: 340 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVTLC 519
           + ++K  ELR K+               + LRVAKVTGG  +KLSKI+VVR +IARV   
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 520 ITRR*RSILETTTKTRN 570
           I+++ R+ L    K ++
Sbjct: 61  ISQKQRAALREAYKKKS 77


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +3

Query: 528 KMKVNLRNHYKNKKYK--PLDLRAKKTRAMRKALTKHEAKI 644
           K++  LR  YK KK    PLDLR KKT A+R+ LTKH+  +
Sbjct: 155 KVRTALREAYKKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 340 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRV 486
           + ++K   LR ++               + LRVA+VTGG  +KLS I+V
Sbjct: 108 MARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIKV 156


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 97  PHPAPEGCTSASSESAPSDQP 35
           P PAPE   +A+ E+APSD P
Sbjct: 53  PQPAPEEAPAAAEEAAPSDDP 73


>07_03_1414 - 26403361-26403969
          Length = 202

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 85  ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 225
           AL A +  P +  G++  + + +T G+ L P LEE +    GL L+D
Sbjct: 76  ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122


>07_03_1422 + 26462871-26463434,26463772-26463897
          Length = 229

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 85  ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 225
           AL   +  P Y  G+V  + + +T G+ L P LEE      GL L D
Sbjct: 74  ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120


>07_03_1413 - 26396426-26396890
          Length = 154

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 85  ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 225
           AL   +  P Y  G+V  + + +T G+ L P LEE      GL L D
Sbjct: 28  ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74


>02_01_0228 +
           1507314-1507566,1507645-1507913,1508010-1508213,
           1508323-1508415,1508509-1508604,1508688-1509032,
           1509123-1509191,1509284-1509367,1509455-1509520,
           1509735-1509800,1509934-1509999,1510097-1510162,
           1510280-1510327,1510406-1510468,1510554-1510619,
           1510782-1510841,1511185-1511232,1511315-1511605
          Length = 750

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 537 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKKSLFPPRVYAVKA 707
           + L NH+ N+K K +  + KK    +KA+     K   +TR+E+R+K   P + Y  +A
Sbjct: 230 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKD--PAKKYPHRA 286


>04_04_1159 -
           31352922-31353098,31354117-31354267,31354581-31354812,
           31354902-31355112,31355791-31355909,31355994-31356176,
           31356283-31356481,31356636-31357015,31357127-31357191,
           31357925-31357990,31358427-31358501,31358781-31358852,
           31359318-31359386,31359476-31359547,31359658-31359729,
           31360126-31360230,31360282-31360353,31361053-31361230,
           31361707-31361791
          Length = 860

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +1

Query: 76  SLLALDADILGPSYKSGQVPSWLNALTNGKVLWPL---LEERIHDLLG-LNLFDHQWGGG 243
           SL  L+   +  +  SG++PS L+ LT  K+LW        +I D +G  NL D ++ G 
Sbjct: 164 SLFKLEELFIDSAGLSGELPSSLSKLTRMKILWASDNNFTGQIPDYIGSWNLTDLRFQGN 223

Query: 244 YF 249
            F
Sbjct: 224 SF 225


>10_08_0936 -
           21679002-21679800,21679893-21680116,21681174-21681361,
           21681505-21682597
          Length = 767

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 97  PHPAPEGCTSASSESAPSDQPILPRH 20
           P P P   +S +S S P   P+LP+H
Sbjct: 82  PTPTPPPPSSTASSSLPPPTPLLPKH 107


>08_02_0431 +
           17053928-17054189,17054296-17054564,17054661-17054864,
           17054974-17055066,17055160-17055255,17055339-17055683,
           17055935-17056018,17056106-17056171,17056268-17056333,
           17056436-17056501,17056635-17056700,17056798-17056863,
           17056981-17057028,17057107-17057169,17057255-17057320,
           17057483-17057542,17057888-17057935,17058019-17058255,
           17058346-17058366
          Length = 741

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 537 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 671
           + L NH+ N+K K +  + KK    +KA+     K   +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279


>07_01_0794 -
           6179424-6179714,6179797-6179844,6180189-6180248,
           6180411-6180476,6180562-6180624,6180703-6180750,
           6180868-6180933,6181031-6181096,6181230-6181295,
           6181510-6181575,6181663-6181746,6181839-6181907,
           6181998-6182342,6182426-6182521,6182615-6182707,
           6182817-6183020,6183117-6183385,6183492-6183753
          Length = 753

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 537 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 671
           + L NH+ N+K K +  + KK    +KA+     K   +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279


>02_02_0061 + 6468190-6471046,6471318-6471736
          Length = 1091

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +1

Query: 13  LSSVWVKLVDRRGHFQTTLKYSLLALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEE 189
           + ++W+     +G   +    SL  L A +LG +  +G +PS++ +L N K L  +LEE
Sbjct: 91  MENIWLYSNKLQGQIPSEFG-SLQNLQALVLGENRLTGSIPSFIGSLANLKFL--ILEE 146


>01_01_1202 - 9681836-9683146
          Length = 436

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -3

Query: 199 RESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSDQP 35
           RE +L  EA      SGHS+N G      + Q+  H   E     S+ SA +  P
Sbjct: 272 RERNLEREAPMAVSVSGHSSNQGGSSQHAVIQIEQHEEGETVPLVSAASANNAAP 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,217,984
Number of Sequences: 37544
Number of extensions: 322609
Number of successful extensions: 1166
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -