Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20967
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 84 1e-16
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 83 3e-16
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 83 3e-16
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 54 1e-07
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 42 7e-04
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.93
07_03_1414 - 26403361-26403969 31 1.2
07_03_1422 + 26462871-26463434,26463772-26463897 29 2.8
07_03_1413 - 26396426-26396890 29 2.8
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 29 3.8
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548... 29 5.0
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 28 6.6
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 28 6.6
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 28 6.6
02_02_0061 + 6468190-6471046,6471318-6471736 28 6.6
01_01_1202 - 9681836-9683146 28 8.7
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = -1
Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
LFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQF
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQF 77
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 82.6 bits (195), Expect = 3e-16
Identities = 34/53 (64%), Positives = 43/53 (81%)
Frame = -1
Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
LFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQF
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQF 76
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 82.6 bits (195), Expect = 3e-16
Identities = 34/53 (64%), Positives = 43/53 (81%)
Frame = -1
Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
LFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQF
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQF 60
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Frame = +3
Query: 516 VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKH------------------EAK 641
V QK + LR YK K PLDLR KKTRA+R+ LTKH +
Sbjct: 60 VISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLS 119
Query: 642 IKTRKEIRKKSLFPPRVYAVKA 707
+KT +E +++ FP R YA+KA
Sbjct: 120 LKTEREKKREKYFPMRKYAIKA 141
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/77 (38%), Positives = 44/77 (57%)
Frame = +1
Query: 340 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVTLC 519
+ ++K ELR K+ + LRVAKVTGG +KLSKI+VVR +IARV
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 520 ITRR*RSILETTTKTRN 570
I+++ R+ L K ++
Sbjct: 61 ISQKQRAALREAYKKKS 77
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = +3
Query: 528 KMKVNLRNHYKNKKYK--PLDLRAKKTRAMRKALTKHEAKI 644
K++ LR YK KK PLDLR KKT A+R+ LTKH+ +
Sbjct: 155 KVRTALREAYKKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 340 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRV 486
+ ++K LR ++ + LRVA+VTGG +KLS I+V
Sbjct: 108 MARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIKV 156
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.93
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 97 PHPAPEGCTSASSESAPSDQP 35
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>07_03_1414 - 26403361-26403969
Length = 202
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 85 ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 225
AL A + P + G++ + + +T G+ L P LEE + GL L+D
Sbjct: 76 ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 85 ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 225
AL + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 74 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 85 ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 225
AL + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 28 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 537 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKKSLFPPRVYAVKA 707
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K P + Y +A
Sbjct: 230 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKD--PAKKYPHRA 286
>04_04_1159 -
31352922-31353098,31354117-31354267,31354581-31354812,
31354902-31355112,31355791-31355909,31355994-31356176,
31356283-31356481,31356636-31357015,31357127-31357191,
31357925-31357990,31358427-31358501,31358781-31358852,
31359318-31359386,31359476-31359547,31359658-31359729,
31360126-31360230,31360282-31360353,31361053-31361230,
31361707-31361791
Length = 860
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +1
Query: 76 SLLALDADILGPSYKSGQVPSWLNALTNGKVLWPL---LEERIHDLLG-LNLFDHQWGGG 243
SL L+ + + SG++PS L+ LT K+LW +I D +G NL D ++ G
Sbjct: 164 SLFKLEELFIDSAGLSGELPSSLSKLTRMKILWASDNNFTGQIPDYIGSWNLTDLRFQGN 223
Query: 244 YF 249
F
Sbjct: 224 SF 225
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 97 PHPAPEGCTSASSESAPSDQPILPRH 20
P P P +S +S S P P+LP+H
Sbjct: 82 PTPTPPPPSSTASSSLPPPTPLLPKH 107
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 537 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 671
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 537 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 671
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 13 LSSVWVKLVDRRGHFQTTLKYSLLALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEE 189
+ ++W+ +G + SL L A +LG + +G +PS++ +L N K L +LEE
Sbjct: 91 MENIWLYSNKLQGQIPSEFG-SLQNLQALVLGENRLTGSIPSFIGSLANLKFL--ILEE 146
>01_01_1202 - 9681836-9683146
Length = 436
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -3
Query: 199 RESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSDQP 35
RE +L EA SGHS+N G + Q+ H E S+ SA + P
Sbjct: 272 RERNLEREAPMAVSVSGHSSNQGGSSQHAVIQIEQHEEGETVPLVSAASANNAAP 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,217,984
Number of Sequences: 37544
Number of extensions: 322609
Number of successful extensions: 1166
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -