Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20967
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              90   2e-18
SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)         70   2e-12
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         33   0.31 
SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)                   29   5.1  
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)                  28   6.7  
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)          28   8.9  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 38/53 (71%), Positives = 46/53 (86%)
 Frame = -1

Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
           L EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQF
Sbjct: 31  LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQF 83


>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 37/72 (51%), Positives = 45/72 (62%)
 Frame = +3

Query: 489 KKSYRTCYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 668
           +KS      V  Q  + NLR  Y+ KKY PLDLR K TRAMR++LTK EA  KT K+ +K
Sbjct: 59  RKSVARVLTVVSQTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKK 118

Query: 669 KSLFPPRVYAVK 704
            + F  R YAVK
Sbjct: 119 LAHFSLRKYAVK 130



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 32/67 (47%), Positives = 39/67 (58%)
 Frame = +1

Query: 346 KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVTLCIT 525
           KVK  ELR K                + LRVAKVTGG ASKLSKI+VVRK++ARV   ++
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70

Query: 526 RR*RSIL 546
           +  R  L
Sbjct: 71  QTQRDNL 77


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 97  PHPAPEGCTSASSESAPSDQPILPRHWTRLQL 2
           P P P GC        P D P+ P  W R+QL
Sbjct: 743 PPPPPPGCAGLPPPPPPIDVPMKPLFWKRIQL 774


>SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -1

Query: 156 GQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFYPDTGQDYS 4
           G+GI  TR    ++ + KY +  R         + P  + + Y D  QD++
Sbjct: 146 GEGILQTRTYDMYITYDKYYQTPRLWLYGYNENRKPLSVEEMYEDMSQDHA 196


>SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)
          Length = 454

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +3

Query: 486 CKKSYRTCYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIR 665
           CK    + +     K K   R   +NK Y  +DL+ +++ A+     K     +  + IR
Sbjct: 4   CKSVRSSDFDEQDDKWKRQTRGKQENKLYSFVDLKGEQSDALLVEAFKKGGLDEVNRLIR 63

Query: 666 KKSLFPPRVY 695
           ++ +F P +Y
Sbjct: 64  EEGVFLPYLY 73


>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
          Length = 311

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 558 KNKKYKPLDLRAKKTR-AMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 698
           +N+K    DL  K T  +M  +  KH AK+  R E++  S  PP V A
Sbjct: 104 ENEKLWLSDLVEKSTPCSMDNSRQKHIAKLLLRSEMKGNSELPPHVQA 151


>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
          Length = 769

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 138 TRDLSRFVRWPKYIRIQRQKAVLQRRLKVP-PPINQFYPDTGQDY 7
           TRDL  F+   +YI I++    + RRL +P PP  Q   D    Y
Sbjct: 29  TRDL-HFMNTEEYIMIRKAAKAIVRRLSLPSPPKLQILVDRAAHY 72


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 492 KSYRTCYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 659
           K  +TC I YH+    N  NH K K Y+    +  + +  R  +   E   K+  +
Sbjct: 411 KKDKTCIIFYHRDSNCNKSNH-KTKYYEVRTYKEARIQVQRIVVVMLEPDTKSHSK 465


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,479,701
Number of Sequences: 59808
Number of extensions: 357600
Number of successful extensions: 1143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)