Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20967
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    92   4e-19
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    92   4e-19
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    92   4e-19
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    92   4e-19
L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...    62   5e-10
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    29   2.6  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    29   2.6  

>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 39/53 (73%), Positives = 47/53 (88%)
 Frame = -1

Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
           LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 39/53 (73%), Positives = 47/53 (88%)
 Frame = -1

Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
           LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 39/53 (73%), Positives = 47/53 (88%)
 Frame = -1

Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
           LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 39/53 (73%), Positives = 47/53 (88%)
 Frame = -1

Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
           LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84


>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 31/73 (42%), Positives = 43/73 (58%)
 Frame = +3

Query: 489 KKSYRTCYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 668
           +K+      V +Q  K  LR  Y + KYKP+DLR KKTRA+R+ LT HE  +++ K+  K
Sbjct: 51  RKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAK 110

Query: 669 KSLFPPRVYAVKA 707
                 R +AVKA
Sbjct: 111 SRNQAVRKFAVKA 123



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 29/61 (47%), Positives = 34/61 (55%)
 Frame = +1

Query: 346 KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVTLCIT 525
           K+KC  LR +                  LRV+KVTGG ASKLSKIRVVRK IAR+   I 
Sbjct: 3   KLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVIN 62

Query: 526 R 528
           +
Sbjct: 63  Q 63


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 558 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 671
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 558 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 671
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 558 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 671
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,396,049
Number of Sequences: 27780
Number of extensions: 267334
Number of successful extensions: 929
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)