BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20967 (726 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 92 4e-19 AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 92 4e-19 AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 92 4e-19 AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 92 4e-19 L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal prote... 62 5e-10 Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 29 2.6 Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 29 2.6 X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 29 2.6 >AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical protein Y73B3A.18b protein. Length = 199 Score = 91.9 bits (218), Expect = 4e-19 Identities = 39/53 (73%), Positives = 47/53 (88%) Frame = -1 Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31 LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187 >AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical protein Y73B3A.18a protein. Length = 234 Score = 91.9 bits (218), Expect = 4e-19 Identities = 39/53 (73%), Positives = 47/53 (88%) Frame = -1 Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31 LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187 >AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal protein, large subunitprotein 7A, isoform a protein. Length = 265 Score = 91.9 bits (218), Expect = 4e-19 Identities = 39/53 (73%), Positives = 47/53 (88%) Frame = -1 Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31 LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84 >AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal protein, large subunitprotein 7A, isoform c protein. Length = 245 Score = 91.9 bits (218), Expect = 4e-19 Identities = 39/53 (73%), Positives = 47/53 (88%) Frame = -1 Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31 LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84 >L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal protein, large subunitprotein 35 protein. Length = 123 Score = 61.7 bits (143), Expect = 5e-10 Identities = 31/73 (42%), Positives = 43/73 (58%) Frame = +3 Query: 489 KKSYRTCYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 668 +K+ V +Q K LR Y + KYKP+DLR KKTRA+R+ LT HE +++ K+ K Sbjct: 51 RKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAK 110 Query: 669 KSLFPPRVYAVKA 707 R +AVKA Sbjct: 111 SRNQAVRKFAVKA 123 Score = 52.0 bits (119), Expect = 4e-07 Identities = 29/61 (47%), Positives = 34/61 (55%) Frame = +1 Query: 346 KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVTLCIT 525 K+KC LR + LRV+KVTGG ASKLSKIRVVRK IAR+ I Sbjct: 3 KLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVIN 62 Query: 526 R 528 + Sbjct: 63 Q 63 >Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical protein M01E5.5b protein. Length = 734 Score = 29.5 bits (63), Expect = 2.6 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +3 Query: 558 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 671 K ++ +D K+ R +RKA+TK E KIK KE K Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306 >Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical protein M01E5.5a protein. Length = 806 Score = 29.5 bits (63), Expect = 2.6 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +3 Query: 558 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 671 K ++ +D K+ R +RKA+TK E KIK KE K Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378 >X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase protein. Length = 806 Score = 29.5 bits (63), Expect = 2.6 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +3 Query: 558 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 671 K ++ +D K+ R +RKA+TK E KIK KE K Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,396,049 Number of Sequences: 27780 Number of extensions: 267334 Number of successful extensions: 929 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 878 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 929 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1708383636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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