BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20967 (726 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.1 DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.1 AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 5.1 AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 22 6.8 AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 9.0 AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 9.0 >DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 22.2 bits (45), Expect = 5.1 Identities = 7/24 (29%), Positives = 12/24 (50%) Frame = +3 Query: 501 RTCYIVYHQKMKVNLRNHYKNKKY 572 +TCY YH + + H K++ Sbjct: 386 KTCYYPYHPSTQEDSEEHLTPKRF 409 >DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 22.2 bits (45), Expect = 5.1 Identities = 7/24 (29%), Positives = 12/24 (50%) Frame = +3 Query: 501 RTCYIVYHQKMKVNLRNHYKNKKY 572 +TCY YH + + H K++ Sbjct: 386 KTCYYPYHPSTQEDSEEHLTPKRF 409 >AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein protein. Length = 1308 Score = 22.2 bits (45), Expect = 5.1 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = +3 Query: 561 NKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 668 NK+ P + + RK T + I +RKE +K Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKK 813 Score = 21.8 bits (44), Expect = 6.8 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -2 Query: 527 LVIHNVTRAIAFLTTRILDSLEATPPVT 444 +V+ NVT I TT ++ T P+T Sbjct: 830 VVVTNVTTTINTPTTSVISMSGTTVPIT 857 >AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine receptor protein. Length = 694 Score = 21.8 bits (44), Expect = 6.8 Identities = 8/32 (25%), Positives = 16/32 (50%) Frame = -3 Query: 673 DFFLISFLVLIFASCLVRALRIARVFLALKSK 578 DF + S L + C++ +F AL+++ Sbjct: 342 DFIIYSSLSSFYIPCIIMVFLYYNIFKALRNR 373 >AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 593 Score = 21.4 bits (43), Expect = 9.0 Identities = 7/21 (33%), Positives = 11/21 (52%) Frame = +3 Query: 69 EVQPSGAGCGYTWAILQIWTS 131 ++ P G GY +L WT+ Sbjct: 92 KIAPIFKGIGYATCVLSCWTN 112 >AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 646 Score = 21.4 bits (43), Expect = 9.0 Identities = 7/21 (33%), Positives = 11/21 (52%) Frame = +3 Query: 69 EVQPSGAGCGYTWAILQIWTS 131 ++ P G GY +L WT+ Sbjct: 145 KIAPIFKGIGYATCVLSCWTN 165 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 173,665 Number of Sequences: 438 Number of extensions: 3069 Number of successful extensions: 8 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 22535775 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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