Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20967
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 501 RTCYIVYHQKMKVNLRNHYKNKKY 572
           +TCY  YH   + +   H   K++
Sbjct: 386 KTCYYPYHPSTQEDSEEHLTPKRF 409


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 501 RTCYIVYHQKMKVNLRNHYKNKKY 572
           +TCY  YH   + +   H   K++
Sbjct: 386 KTCYYPYHPSTQEDSEEHLTPKRF 409


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 561 NKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 668
           NK+  P   +    +  RK  T  +  I +RKE +K
Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKK 813



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 527 LVIHNVTRAIAFLTTRILDSLEATPPVT 444
           +V+ NVT  I   TT ++     T P+T
Sbjct: 830 VVVTNVTTTINTPTTSVISMSGTTVPIT 857


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -3

Query: 673 DFFLISFLVLIFASCLVRALRIARVFLALKSK 578
           DF + S L   +  C++       +F AL+++
Sbjct: 342 DFIIYSSLSSFYIPCIIMVFLYYNIFKALRNR 373


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 69  EVQPSGAGCGYTWAILQIWTS 131
           ++ P   G GY   +L  WT+
Sbjct: 92  KIAPIFKGIGYATCVLSCWTN 112


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 69  EVQPSGAGCGYTWAILQIWTS 131
           ++ P   G GY   +L  WT+
Sbjct: 145 KIAPIFKGIGYATCVLSCWTN 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,665
Number of Sequences: 438
Number of extensions: 3069
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)