Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20967
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 82 3e-16
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 82 3e-16
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 80 1e-15
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 80 2e-15
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 79 2e-15
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 79 4e-15
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 79 4e-15
At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof... 29 3.1
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 29 4.1
At5g15680.1 68418.m01834 expressed protein 28 5.5
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 82.2 bits (194), Expect = 3e-16
Identities = 33/53 (62%), Positives = 44/53 (83%)
Frame = -1
Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
LFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQF
Sbjct: 22 LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQF 74
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 82.2 bits (194), Expect = 3e-16
Identities = 33/53 (62%), Positives = 44/53 (83%)
Frame = -1
Query: 189 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 31
LFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQF
Sbjct: 23 LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQF 75
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 567 KYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 659
KY+P D AKK R ++KA + E K K+
Sbjct: 93 KYRPEDKAAKKERLVKKAQAEAEGKPSESKK 123
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 80.2 bits (189), Expect = 1e-15
Identities = 39/72 (54%), Positives = 48/72 (66%)
Frame = +3
Query: 489 KKSYRTCYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 668
+KS V QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 669 KSLFPPRVYAVK 704
+ FP R YA+K
Sbjct: 111 EMYFPVRKYAIK 122
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/76 (39%), Positives = 42/76 (55%)
Frame = +1
Query: 340 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVTLC 519
+ ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 520 ITRR*RSILETTTKTR 567
I+++ +S L K +
Sbjct: 61 ISQKQKSALREAYKNK 76
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/72 (54%), Positives = 48/72 (66%)
Frame = +3
Query: 489 KKSYRTCYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 668
+KS V QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 669 KSLFPPRVYAVK 704
+ FP R YA+K
Sbjct: 111 EMYFPIRKYAIK 122
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/76 (39%), Positives = 42/76 (55%)
Frame = +1
Query: 340 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVTLC 519
+ ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 520 ITRR*RSILETTTKTR 567
I+++ +S L K +
Sbjct: 61 ISQKQKSALREAYKNK 76
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/72 (54%), Positives = 48/72 (66%)
Frame = +3
Query: 489 KKSYRTCYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 668
+KS V QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 669 KSLFPPRVYAVK 704
+ FP R YA+K
Sbjct: 111 EMYFPIRKYAIK 122
Score = 50.8 bits (116), Expect = 9e-07
Identities = 29/76 (38%), Positives = 41/76 (53%)
Frame = +1
Query: 340 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVTLC 519
+ ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 520 ITRR*RSILETTTKTR 567
+++ +S L K +
Sbjct: 61 SSQKQKSALREAYKNK 76
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 78.6 bits (185), Expect = 4e-15
Identities = 39/72 (54%), Positives = 47/72 (65%)
Frame = +3
Query: 489 KKSYRTCYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 668
+KS V QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 669 KSLFPPRVYAVK 704
FP R YA+K
Sbjct: 111 DMYFPIRKYAIK 122
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/76 (38%), Positives = 42/76 (55%)
Frame = +1
Query: 340 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVTLC 519
+ ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 520 ITRR*RSILETTTKTR 567
+++ +S L K +
Sbjct: 61 SSQKQKSALREAYKNK 76
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 78.6 bits (185), Expect = 4e-15
Identities = 39/72 (54%), Positives = 47/72 (65%)
Frame = +3
Query: 489 KKSYRTCYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 668
+KS V QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 669 KSLFPPRVYAVK 704
FP R YA+K
Sbjct: 111 DMYFPIRKYAIK 122
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/76 (38%), Positives = 42/76 (55%)
Frame = +1
Query: 340 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVTLC 519
+ ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 520 ITRR*RSILETTTKTR 567
+++ +S L K +
Sbjct: 61 SSQKQKSALREAYKNK 76
>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 366
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 516 VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 659
V H VN +H + YKPL++RA+ + +R A ++ +TRK+
Sbjct: 290 VTHVDWSVN--DHGHPRTYKPLEVRAELIQKLRSARPRYGDGNRTRKD 335
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 193 SSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 77
S+L + + LC H ++G V+ K + +Y H PEG
Sbjct: 451 SNLLLDGRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489
>At5g15680.1 68418.m01834 expressed protein
Length = 2151
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = -3
Query: 235 PIGGQKG*AQEDRESSLRE---EAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSA 65
P+ G G ++SS E + K L + A SG +Q MA P P G +A
Sbjct: 2048 PVQGGTG-GSHPQDSSYSENGTDEKTLVPQTSFKARSGPLQYAMMAATMSQPFPLGAAAA 2106
Query: 64 SSESAPSD 41
S P D
Sbjct: 2107 ESGIPPRD 2114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,771,959
Number of Sequences: 28952
Number of extensions: 258092
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -