Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20966
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch...    71   2e-13
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    66   6e-12
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    52   1e-07
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    44   2e-05
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    29   0.48 
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   1.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   5.9  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   7.8  

>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 129

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 30/58 (51%), Positives = 42/58 (72%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           DD +IV+ D+VYDIS FLD HPGG +++++ AGRDAS  F   GHS  A + L++F +
Sbjct: 18  DDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYI 75


>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 65.7 bits (153), Expect = 6e-12
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = +2

Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           D ++VI  +VYD+S F D+HPGG DIML+YAG+DA+ A++  GHS  A + L+   +
Sbjct: 19  DMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYI 75


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 631
           +DCWI I  +VY++S +L  HP G   +L+YAGRDA+  F
Sbjct: 86  EDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIF 125


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 16/41 (39%), Positives = 28/41 (68%)
 Frame = +2

Query: 509 PDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 631
           PDDCW+ I  +VY+++ +L  HP G   +L+++G DA+  +
Sbjct: 83  PDDCWMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPY 123


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 524 IVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 631
           ++I   V+D++ F  EHPGG  ++    G+DA+ AF
Sbjct: 376 VLINGVVHDMTGF--EHPGGQGLLRSAFGKDATAAF 409


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 659 QPCESAQNS*KPCLRLGLRTPTLYRHRQDARL 564
           QPC    +S K C  L L TP L+ H Q+  +
Sbjct: 620 QPCRWCLDSGKECGELLLGTPLLHSHLQEMHI 651


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 230  QALQITEDEEFEY*FKVERKDDDGTYYQRSEFVSTHAK 343
            QALQ+T  E+FEY    E+      +Y    + S H K
Sbjct: 1014 QALQMTVSEKFEY--DTEQLPSRVLFYAMDRYFSIHKK 1049


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 122 ISGNDCHTNCHYATVVRI-LAYSSQCL 45
           +S  DC T+CH+ + + I L +S  CL
Sbjct: 870 LSPMDCFTSCHFDSDMSIDLKFSMNCL 896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,885
Number of Sequences: 5004
Number of extensions: 54536
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)