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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20966
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0065 + 461182-461271,462222-462288,462408-462664                 68   6e-12
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529           67   1e-11
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592     64   8e-11
02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478     64   1e-10
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471...    51   1e-06
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295...    51   1e-06
09_02_0530 + 10285844-10287217                                         50   2e-06
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344...    48   9e-06
07_01_0887 + 7380332-7380370,7381286-7381640,7382752-7382886,738...    44   1e-04
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117...    31   0.65 
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801...    31   0.86 
01_02_0022 + 10290033-10290407,10290497-10290848,10290923-102910...    31   1.1  
02_04_0395 + 22590097-22590343,22590566-22590921                       30   2.0  
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842...    29   2.6  

>05_01_0065 + 461182-461271,462222-462288,462408-462664
          Length = 137

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 26/58 (44%), Positives = 39/58 (67%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           DDCW++I  +VY++S FL++HPGG D++L   G+DA+  F   GHS  A   +D + V
Sbjct: 21  DDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYV 78


>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
          Length = 150

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
 Frame = +2

Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLE-YAGRDASTAFRSSGHSRMAVKALDRFLV 685
           DCW+VI+ +VYD++ FL++HPGG D++L   A  DA+ AF   GHS  A+  ++ +L+
Sbjct: 26  DCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDVGHSTSAISMMNNYLI 83


>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
          Length = 135

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 24/58 (41%), Positives = 38/58 (65%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           DDCW++I  +VY+++ FL++HPGG D++L    +DA+  F   GHS  A   +D + V
Sbjct: 19  DDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVGHSTTARAMMDEYYV 76


>02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478
          Length = 138

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 22/57 (38%), Positives = 39/57 (68%)
 Frame = +2

Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           DCW++I  +VYD+S F++EHPGG +++L   G+DA+  F   GH+  A + + ++ +
Sbjct: 21  DCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIGHTATAKELMPQYCI 77


>08_02_0958 -
           23044708-23046045,23046131-23046363,23047059-23047199,
           23047296-23048334
          Length = 916

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           D  WIV++  VYD + FL +HPGG D +L  AG D +  F  + HS  A   LD + +
Sbjct: 556 DSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEF-DAIHSDKAKALLDTYRI 612


>08_02_0956 +
           23026108-23027146,23027255-23027395,23029334-23029566,
           23029652-23030989
          Length = 916

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           D  WIV++  VYD + FL +HPGG D +L  AG D +  F  + HS  A   LD + +
Sbjct: 556 DSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEF-DAIHSDKAKALLDTYRI 612


>09_02_0530 + 10285844-10287217
          Length = 457

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/58 (44%), Positives = 35/58 (60%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           DD WI I   VYD++ ++  HPGG   +L  AG+DA+ AF ++ H   A   L RFLV
Sbjct: 31  DDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAF-AAYHPPSARPLLGRFLV 87


>02_05_0889 -
           32532495-32533832,32533919-32534151,32534321-32534461,
           32534564-32535521
          Length = 889

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/59 (35%), Positives = 34/59 (57%)
 Frame = +2

Query: 509 PDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           P+  WI+++  VYD + FL +HPGG D ++  AG D +  F  + HS  A   L+ + +
Sbjct: 527 PESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEF-DAIHSDKARGLLEMYRI 584


>07_01_0887 +
           7380332-7380370,7381286-7381640,7382752-7382886,
           7383029-7383138
          Length = 212

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 28/40 (70%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 631
           D  W V+  RVY+I+ ++  HPGG D++++ AG+D++  F
Sbjct: 154 DSIWTVLKGRVYNIAPYMKFHPGGVDMLMKAAGKDSTALF 193


>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
            1178179-1178378,1178505-1178605,1178747-1179369,
            1179451-1179546,1179637-1179798,1179889-1180068,
            1180173-1180323,1180408-1180641,1180753-1180913,
            1181041-1181163,1181261-1181421,1181655-1181877,
            1181952-1182346,1182461-1182671,1183536-1184522
          Length = 1883

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
 Frame = +3

Query: 276  KLNAKMTTVHTTNEVNLSAPTPNQXXXXXXXXXXXXXXRFVNPWSVNTEQKQWTEVVPGS 455
            K  A+M T  T N++ L    P                RFV    VNT  + WT+   G 
Sbjct: 1791 KNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGE 1850

Query: 456  P-----EAKD-RTITLAEVAHHDTP 512
            P     +AKD   + L E+ + D P
Sbjct: 1851 PMPSVKKAKDSAAVLLLELLNRDFP 1875


>09_02_0511 -
           10079180-10079355,10079656-10079722,10080144-10080181,
           10080255-10080336
          Length = 120

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 9/18 (50%), Positives = 17/18 (94%)
 Frame = +2

Query: 542 VYDISTFLDEHPGGGDIM 595
           VYD++++++EHPGG +I+
Sbjct: 41  VYDVTSYVEEHPGGDEIL 58


>01_02_0022 +
           10290033-10290407,10290497-10290848,10290923-10291070,
           10291145-10291225,10291651-10291822,10292120-10292158,
           10292384-10292543,10292676-10292779,10292979-10293278
          Length = 576

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 506 HPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFL 682
           HP    +     +Y  S F +  P G  ++L Y G   +T   S   S + V+A+DR L
Sbjct: 433 HPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGSTNTGIVSKTESEL-VEAVDRDL 490


>02_04_0395 + 22590097-22590343,22590566-22590921
          Length = 200

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
 Frame = +1

Query: 565 RRASWRW---------RYNVGVRRPRRKHGFQEFWALSHGC*GSR 672
           RR SWRW         R    +R  RR HG  E WAL+    G R
Sbjct: 30  RRGSWRWIRRHHHRIWRARSWIRSRRRGHGVGEAWALAAATGGGR 74


>08_02_1171 +
           24880363-24881355,24882553-24882702,24883505-24884210,
           24885012-24885404,24885759-24885805,24886088-24886111
          Length = 770

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 587 RHRQDARLRMSIYHRHDHK*LSNNHR 510
           R R+ A + +  YH H H   SNNHR
Sbjct: 82  RRRRKAMMPVRTYHHHHHHNNSNNHR 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,495,756
Number of Sequences: 37544
Number of extensions: 373455
Number of successful extensions: 1066
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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