Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20966
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0065 + 461182-461271,462222-462288,462408-462664 68 6e-12
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529 67 1e-11
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592 64 8e-11
02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478 64 1e-10
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 51 1e-06
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 51 1e-06
09_02_0530 + 10285844-10287217 50 2e-06
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 48 9e-06
07_01_0887 + 7380332-7380370,7381286-7381640,7382752-7382886,738... 44 1e-04
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 31 0.65
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 31 0.86
01_02_0022 + 10290033-10290407,10290497-10290848,10290923-102910... 31 1.1
02_04_0395 + 22590097-22590343,22590566-22590921 30 2.0
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 29 2.6
>05_01_0065 + 461182-461271,462222-462288,462408-462664
Length = 137
Score = 68.1 bits (159), Expect = 6e-12
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = +2
Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
DDCW++I +VY++S FL++HPGG D++L G+DA+ F GHS A +D + V
Sbjct: 21 DDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYV 78
>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
Length = 150
Score = 66.9 bits (156), Expect = 1e-11
Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Frame = +2
Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLE-YAGRDASTAFRSSGHSRMAVKALDRFLV 685
DCW+VI+ +VYD++ FL++HPGG D++L A DA+ AF GHS A+ ++ +L+
Sbjct: 26 DCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDVGHSTSAISMMNNYLI 83
>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
Length = 135
Score = 64.5 bits (150), Expect = 8e-11
Identities = 24/58 (41%), Positives = 38/58 (65%)
Frame = +2
Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
DDCW++I +VY+++ FL++HPGG D++L +DA+ F GHS A +D + V
Sbjct: 19 DDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVGHSTTARAMMDEYYV 76
>02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478
Length = 138
Score = 64.1 bits (149), Expect = 1e-10
Identities = 22/57 (38%), Positives = 39/57 (68%)
Frame = +2
Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
DCW++I +VYD+S F++EHPGG +++L G+DA+ F GH+ A + + ++ +
Sbjct: 21 DCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIGHTATAKELMPQYCI 77
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +2
Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
D WIV++ VYD + FL +HPGG D +L AG D + F + HS A LD + +
Sbjct: 556 DSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEF-DAIHSDKAKALLDTYRI 612
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +2
Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
D WIV++ VYD + FL +HPGG D +L AG D + F + HS A LD + +
Sbjct: 556 DSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEF-DAIHSDKAKALLDTYRI 612
>09_02_0530 + 10285844-10287217
Length = 457
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +2
Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
DD WI I VYD++ ++ HPGG +L AG+DA+ AF ++ H A L RFLV
Sbjct: 31 DDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAF-AAYHPPSARPLLGRFLV 87
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +2
Query: 509 PDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
P+ WI+++ VYD + FL +HPGG D ++ AG D + F + HS A L+ + +
Sbjct: 527 PESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEF-DAIHSDKARGLLEMYRI 584
>07_01_0887 +
7380332-7380370,7381286-7381640,7382752-7382886,
7383029-7383138
Length = 212
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = +2
Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 631
D W V+ RVY+I+ ++ HPGG D++++ AG+D++ F
Sbjct: 154 DSIWTVLKGRVYNIAPYMKFHPGGVDMLMKAAGKDSTALF 193
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 31.5 bits (68), Expect = 0.65
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Frame = +3
Query: 276 KLNAKMTTVHTTNEVNLSAPTPNQXXXXXXXXXXXXXXRFVNPWSVNTEQKQWTEVVPGS 455
K A+M T T N++ L P RFV VNT + WT+ G
Sbjct: 1791 KNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGE 1850
Query: 456 P-----EAKD-RTITLAEVAHHDTP 512
P +AKD + L E+ + D P
Sbjct: 1851 PMPSVKKAKDSAAVLLLELLNRDFP 1875
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 31.1 bits (67), Expect = 0.86
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +2
Query: 542 VYDISTFLDEHPGGGDIM 595
VYD++++++EHPGG +I+
Sbjct: 41 VYDVTSYVEEHPGGDEIL 58
>01_02_0022 +
10290033-10290407,10290497-10290848,10290923-10291070,
10291145-10291225,10291651-10291822,10292120-10292158,
10292384-10292543,10292676-10292779,10292979-10293278
Length = 576
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 506 HPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFL 682
HP + +Y S F + P G ++L Y G +T S S + V+A+DR L
Sbjct: 433 HPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGSTNTGIVSKTESEL-VEAVDRDL 490
>02_04_0395 + 22590097-22590343,22590566-22590921
Length = 200
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Frame = +1
Query: 565 RRASWRW---------RYNVGVRRPRRKHGFQEFWALSHGC*GSR 672
RR SWRW R +R RR HG E WAL+ G R
Sbjct: 30 RRGSWRWIRRHHHRIWRARSWIRSRRRGHGVGEAWALAAATGGGR 74
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 587 RHRQDARLRMSIYHRHDHK*LSNNHR 510
R R+ A + + YH H H SNNHR
Sbjct: 82 RRRRKAMMPVRTYHHHHHHNNSNNHR 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,495,756
Number of Sequences: 37544
Number of extensions: 373455
Number of successful extensions: 1066
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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