Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20966
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 69 4e-12
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 69 4e-12
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20) 50 2e-06
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 47 2e-05
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19) 46 2e-05
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12) 35 0.071
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 33 0.29
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 31 1.2
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072) 29 3.5
>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
Length = 109
Score = 68.9 bits (161), Expect = 4e-12
Identities = 26/56 (46%), Positives = 42/56 (75%)
Frame = +2
Query: 518 CWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
CW+VI+++V+D++ FLDEHPGG +++LE AG DAS +F GHS A + ++ + +
Sbjct: 24 CWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSDARELMNEYCI 79
>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
Length = 172
Score = 68.9 bits (161), Expect = 4e-12
Identities = 26/56 (46%), Positives = 42/56 (75%)
Frame = +2
Query: 518 CWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
CW+VI+++V+D++ FLDEHPGG +++LE AG DAS +F GHS A + ++ + +
Sbjct: 24 CWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSDARELMNEYCI 79
>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
Length = 142
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +2
Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
DCW+V+ D VYD+S ++ HPGG +L AGR+ + F++ + + K L F +
Sbjct: 26 DCWVVVEDSVYDLSKWIGHHPGGELPILYMAGRECTDVFKAFHPAWVFTKKLPAFKI 82
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +2
Query: 521 WIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
W+VI+ +VYD+ F +E P G ++ +YA DA+ AF + HS A + LV
Sbjct: 1246 WVVIHGKVYDLKEFKEEAPCGESLLQKYAACDATKAFEEANHSYEARMMMQDHLV 1300
>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
Length = 167
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Frame = +2
Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSG----HSRMAVKALDRF 679
D W++ +VYDIS F + HPGG D++L +G+D T+ S+G HS++A L ++
Sbjct: 23 DLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDV-TSIMSNGEIHKHSQIAYGWLKKY 80
>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 524 IVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRS 637
+ I+ +VYD++ FL HPGG +++L AGRD + F +
Sbjct: 41 LAIHGKVYDVTNFLLRHPGGKELLLIGAGRDVTLVFET 78
>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
Length = 303
Score = 34.7 bits (76), Expect = 0.071
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 461 SQGPHNYFGRSCPP*HPD---DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAG 610
S P F S H D W D VYD++ F+++HPGG +++ AG
Sbjct: 151 SSSPSRTFSLSEVAKHTDARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAG 203
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 521 WIVIYDRVYDISTFLDEHPGGGDIMLEYAG 610
W+ VYDI+ F+D HPGG ++ AG
Sbjct: 220 WVTYKGGVYDITDFIDGHPGGTSKIILAAG 249
>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
Length = 984
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2
Query: 518 CWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSS 640
C + D Y T +EH GG I YAGR A RSS
Sbjct: 122 CAKLAKDDRYSTRTPAEEHAQGGSIFDAYAGRGACAVVRSS 162
>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
Length = 2374
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 71 YEQLWHSDNWCDSHSPRFEHQQR*HETFRSSALIKRTTSLQ*INCAETALR 223
+ QL S+N+C+ H + +Q E + S K +SL+ CA T++R
Sbjct: 1636 FTQLITSNNYCNYHRLTNQVEQPVQERVKDSRKPKTVSSLEASGCAMTSVR 1686
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,378,785
Number of Sequences: 59808
Number of extensions: 426834
Number of successful extensions: 1006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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