Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20966
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.89 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -3

Query: 556 RYIIDTIINNYPTIIGVSWWATSAKVIVRSLASGEPGTTSVHCFCSVLTDQGLTKRKAAI 377
           +Y+  T+IN     +  +  + SA    + L+ G   T S  C   VL    +T   A++
Sbjct: 4   KYVFTTLINAAFLCLASTILSESAGTSCKWLSEGGNDTRSADCTLRVLDPGAITGLVASL 63

Query: 376 VSAIR 362
             A++
Sbjct: 64  DGALK 68


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 29  ALMHHLNIAKNKLKYEQLWHSDNWCDSHSPR 121
           A+MHHL++AK     E    S++   S  P+
Sbjct: 339 AMMHHLHVAKQMASPEPPKSSESSTGSSIPK 369


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 626 PCLRLGLRTPTLYRHRQD 573
           P  R+ +R  T Y+H+QD
Sbjct: 82  PYNRMDMRNATYYQHQQD 99


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 231 KLYKSLRTRSSNINLKLNAKMTTVH 305
           +L K L +++  +NLK +A   T+H
Sbjct: 493 RLRKELDSKTGGVNLKGHAHWLTLH 517


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 545 YDISTFLDEHPGGGDI 592
           YDIS + D HP  G I
Sbjct: 84  YDISNYTDVHPIFGTI 99


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 545 YDISTFLDEHPGGGDI 592
           YDIS + D HP  G I
Sbjct: 84  YDISNYTDVHPIFGTI 99


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 594 CWSTQAETQARLSGVLGT 647
           CW T+ E   +  GV+GT
Sbjct: 459 CWDTRKEYIPQNLGVIGT 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,685
Number of Sequences: 438
Number of extensions: 4081
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)