BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20966 (687 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g26340.1 68414.m03212 cytochrome b5, putative similar to cyto... 76 3e-14 At2g46650.1 68415.m05820 cytochrome b5, putative similar to cyto... 71 7e-13 At5g48810.1 68418.m06039 cytochrome b5 identical to cytochrome b... 68 5e-12 At5g53560.1 68418.m06655 cytochrome b5 isoform 1 identical to SP... 67 1e-11 At2g32720.1 68415.m04004 cytochrome b5, putative similar to Cyto... 66 2e-11 At1g60660.1 68414.m06829 cytochrome b5 domain-containing protein... 59 2e-09 At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ... 54 1e-07 At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to ... 50 1e-06 At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati... 46 2e-05 At5g09680.1 68418.m01120 cytochrome b5 domain-containing protein... 45 5e-05 At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1) ... 44 1e-04 At5g35860.1 68418.m04307 hypothetical protein contains Pfam prof... 30 1.7 At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein... 30 1.7 At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX) ident... 29 2.9 >At1g26340.1 68414.m03212 cytochrome b5, putative similar to cytochrome b5 GB:BAA74839 GI:4240120 from [Arabidopsis thaliana] Length = 135 Score = 75.8 bits (178), Expect = 3e-14 Identities = 27/58 (46%), Positives = 45/58 (77%) Frame = +2 Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685 DDCW+VI +VYD+S+++DEHPGG D++L AG+DA+ F +GHS+ A + ++++ + Sbjct: 20 DDCWVVIDGKVYDVSSYMDEHPGGDDVLLAVAGKDATDDFEDAGHSKDARELMEKYFI 77 >At2g46650.1 68415.m05820 cytochrome b5, putative similar to cytochome b5 GI:2695711 from [Olea europaea] Length = 132 Score = 70.9 bits (166), Expect = 7e-13 Identities = 27/58 (46%), Positives = 42/58 (72%) Frame = +2 Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685 +DCWI+I+ +VYDISTF+DEHPGG +++L G+DAS F HS+ A + + ++ + Sbjct: 17 NDCWILIHGKVYDISTFMDEHPGGDNVLLAVTGKDASIDFEDVNHSKDAKELMKKYCI 74 >At5g48810.1 68418.m06039 cytochrome b5 identical to cytochrome b5 [Arabidopsis thaliana] GI:4240122; strong similarity to Cytochrome B5 SP:P49098 from [Nicotiana tabacum] Length = 140 Score = 68.1 bits (159), Expect = 5e-12 Identities = 28/57 (49%), Positives = 38/57 (66%) Frame = +2 Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685 DCWIVI +VYD++ FLD+HPGG +++L G+DA+ F GHS A LD + V Sbjct: 21 DCWIVIDGKVYDVTKFLDDHPGGDEVILTSTGKDATDDFEDVGHSSTAKAMLDEYYV 77 >At5g53560.1 68418.m06655 cytochrome b5 isoform 1 identical to SP|Q42342 Cytochrome b5 isoform 1 [Arabidopsis thaliana] Length = 134 Score = 66.9 bits (156), Expect = 1e-11 Identities = 23/57 (40%), Positives = 39/57 (68%) Frame = +2 Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685 DCW++I +VYD++ F+D+HPGG +++L G+DA+ F GHS A +D++ + Sbjct: 21 DCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFI 77 >At2g32720.1 68415.m04004 cytochrome b5, putative similar to Cytochrome B5 SP:P49098 from [Nicotiana tabacum] Length = 134 Score = 66.1 bits (154), Expect = 2e-11 Identities = 25/57 (43%), Positives = 40/57 (70%) Frame = +2 Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685 DCWIVI +VY+++ FL++HPGG D++L G+DA+ F GHS A + ++++ V Sbjct: 21 DCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYV 77 >At1g60660.1 68414.m06829 cytochrome b5 domain-containing protein contains InterPro accession IPR001199: Cytochrome b5 Length = 121 Score = 59.3 bits (137), Expect = 2e-09 Identities = 23/58 (39%), Positives = 40/58 (68%) Frame = +2 Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685 +DCWI+I D+VYDI+++++EHP GGD +L++AG D++ F H+ ++ F + Sbjct: 61 NDCWIIIKDKVYDITSYVEEHP-GGDAILDHAGDDSTDGFFGPQHATRVFDMIEDFYI 117 >At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana} Length = 917 Score = 53.6 bits (123), Expect = 1e-07 Identities = 23/58 (39%), Positives = 35/58 (60%) Frame = +2 Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685 D CWI+++ +YD + FL +HPGG D +L AG D + F + HS A K L+ + + Sbjct: 557 DSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKMLEDYRI 613 >At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1) (NR1){Arabidopsis thaliana} Length = 917 Score = 50.0 bits (114), Expect = 1e-06 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = +2 Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685 D WI+++ +YD + FL +HPGG D +L AG D + F + HS A K L+ + + Sbjct: 560 DSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRI 616 >At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative similar to delta-8 sphingolipid desaturase GI:3819708 from [Brassica napus] Length = 449 Score = 46.4 bits (105), Expect = 2e-05 Identities = 19/41 (46%), Positives = 26/41 (63%) Frame = +2 Query: 509 PDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 631 P D WI I +VYD+S ++ HPGG +L AG+D + AF Sbjct: 21 PGDLWISIQGKVYDVSDWVKSHPGGEAAILNLAGQDVTDAF 61 >At5g09680.1 68418.m01120 cytochrome b5 domain-containing protein flavohemoprotein b5+b5R, Homo sapiens, EMBL:AF169803 Length = 211 Score = 44.8 bits (101), Expect = 5e-05 Identities = 17/40 (42%), Positives = 27/40 (67%) Frame = +2 Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 631 D W V+ RVY+IS +++ HPGG D++++ GRD + F Sbjct: 141 DSMWTVLKGRVYNISPYMNFHPGGVDMLMKAVGRDGTLLF 180 >At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1) identical to delta-8 sphingolipid desaturase GI:3819710 from [Arabidopsis thaliana]; contains Pfam profile PF00487: Fatty acid desaturase; contains Pfam profile PF00173: Heme/Steroid binding domain Length = 449 Score = 43.6 bits (98), Expect = 1e-04 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = +2 Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 631 D WI I +VY++S ++ HPGG ++L G+D + AF Sbjct: 23 DLWIAIQGKVYNVSDWIKTHPGGDTVILNLVGQDVTDAF 61 >At5g35860.1 68418.m04307 hypothetical protein contains Pfam profile PF03778: Protein of unknown function (DUF321) Length = 179 Score = 29.9 bits (64), Expect = 1.7 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +1 Query: 583 WRYNVGVRRPRRKHGFQEFWALSHGC 660 WR + +R R HGF FW ++GC Sbjct: 6 WRKVIDLRFWRENHGFTFFWRENYGC 31 >At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein similar to SP|P70580 Membrane associated progesterone receptor component 1 {Rattus norvegicus}; contains Pfam profile PF00173: Heme/Steroid binding domain Length = 100 Score = 29.9 bits (64), Expect = 1.7 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +2 Query: 521 WIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTA 628 ++ I RV+D++T + GGD + +AG+DAS A Sbjct: 21 YVAIKGRVFDVTTGKSFYGSGGDYSM-FAGKDASRA 55 >At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX) identical to SP|P55826 Length = 537 Score = 29.1 bits (62), Expect = 2.9 Identities = 17/59 (28%), Positives = 26/59 (44%) Frame = +2 Query: 506 HPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFL 682 HP + +Y S F + P G ++L Y G +T S + V+A+DR L Sbjct: 394 HPRTQGVETLGTIYSSSLFPNRAPPGRILLLNYIGGSTNTGILSKSEGEL-VEAVDRDL 451 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,682,278 Number of Sequences: 28952 Number of extensions: 293280 Number of successful extensions: 803 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 783 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 802 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1457719448 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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