Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20966
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26340.1 68414.m03212 cytochrome b5, putative similar to cyto...    76   3e-14
At2g46650.1 68415.m05820 cytochrome b5, putative similar to cyto...    71   7e-13
At5g48810.1 68418.m06039 cytochrome b5 identical to cytochrome b...    68   5e-12
At5g53560.1 68418.m06655 cytochrome b5 isoform 1 identical to SP...    67   1e-11
At2g32720.1 68415.m04004 cytochrome b5, putative similar to Cyto...    66   2e-11
At1g60660.1 68414.m06829 cytochrome b5 domain-containing protein...    59   2e-09
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ...    54   1e-07
At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to ...    50   1e-06
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati...    46   2e-05
At5g09680.1 68418.m01120 cytochrome b5 domain-containing protein...    45   5e-05
At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1) ...    44   1e-04
At5g35860.1 68418.m04307 hypothetical protein contains Pfam prof...    30   1.7  
At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein...    30   1.7  
At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX) ident...    29   2.9  

>At1g26340.1 68414.m03212 cytochrome b5, putative similar to
           cytochrome b5 GB:BAA74839 GI:4240120 from [Arabidopsis
           thaliana]
          Length = 135

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 27/58 (46%), Positives = 45/58 (77%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           DDCW+VI  +VYD+S+++DEHPGG D++L  AG+DA+  F  +GHS+ A + ++++ +
Sbjct: 20  DDCWVVIDGKVYDVSSYMDEHPGGDDVLLAVAGKDATDDFEDAGHSKDARELMEKYFI 77


>At2g46650.1 68415.m05820 cytochrome b5, putative similar to
           cytochome b5 GI:2695711 from [Olea europaea]
          Length = 132

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 27/58 (46%), Positives = 42/58 (72%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           +DCWI+I+ +VYDISTF+DEHPGG +++L   G+DAS  F    HS+ A + + ++ +
Sbjct: 17  NDCWILIHGKVYDISTFMDEHPGGDNVLLAVTGKDASIDFEDVNHSKDAKELMKKYCI 74


>At5g48810.1 68418.m06039 cytochrome b5 identical to cytochrome b5
           [Arabidopsis thaliana] GI:4240122; strong similarity to
           Cytochrome B5 SP:P49098 from [Nicotiana tabacum]
          Length = 140

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +2

Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           DCWIVI  +VYD++ FLD+HPGG +++L   G+DA+  F   GHS  A   LD + V
Sbjct: 21  DCWIVIDGKVYDVTKFLDDHPGGDEVILTSTGKDATDDFEDVGHSSTAKAMLDEYYV 77


>At5g53560.1 68418.m06655 cytochrome b5 isoform 1 identical to
           SP|Q42342 Cytochrome b5 isoform 1 [Arabidopsis thaliana]
          Length = 134

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 23/57 (40%), Positives = 39/57 (68%)
 Frame = +2

Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           DCW++I  +VYD++ F+D+HPGG +++L   G+DA+  F   GHS  A   +D++ +
Sbjct: 21  DCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFI 77


>At2g32720.1 68415.m04004 cytochrome b5, putative similar to
           Cytochrome B5 SP:P49098 from [Nicotiana tabacum]
          Length = 134

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 25/57 (43%), Positives = 40/57 (70%)
 Frame = +2

Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           DCWIVI  +VY+++ FL++HPGG D++L   G+DA+  F   GHS  A + ++++ V
Sbjct: 21  DCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYV 77


>At1g60660.1 68414.m06829 cytochrome b5 domain-containing protein
           contains InterPro accession IPR001199: Cytochrome b5
          Length = 121

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 23/58 (39%), Positives = 40/58 (68%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           +DCWI+I D+VYDI+++++EHP GGD +L++AG D++  F    H+      ++ F +
Sbjct: 61  NDCWIIIKDKVYDITSYVEEHP-GGDAILDHAGDDSTDGFFGPQHATRVFDMIEDFYI 117


>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
           SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
           (NR2) {Arabidopsis thaliana}
          Length = 917

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 23/58 (39%), Positives = 35/58 (60%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           D CWI+++  +YD + FL +HPGG D +L  AG D +  F +  HS  A K L+ + +
Sbjct: 557 DSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKMLEDYRI 613


>At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to
           SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1)
           (NR1){Arabidopsis thaliana}
          Length = 917

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFLV 685
           D  WI+++  +YD + FL +HPGG D +L  AG D +  F +  HS  A K L+ + +
Sbjct: 560 DSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRI 616


>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
           similar to delta-8 sphingolipid desaturase GI:3819708
           from [Brassica napus]
          Length = 449

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +2

Query: 509 PDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 631
           P D WI I  +VYD+S ++  HPGG   +L  AG+D + AF
Sbjct: 21  PGDLWISIQGKVYDVSDWVKSHPGGEAAILNLAGQDVTDAF 61


>At5g09680.1 68418.m01120 cytochrome b5 domain-containing protein
           flavohemoprotein b5+b5R, Homo sapiens, EMBL:AF169803
          Length = 211

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +2

Query: 512 DDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 631
           D  W V+  RVY+IS +++ HPGG D++++  GRD +  F
Sbjct: 141 DSMWTVLKGRVYNISPYMNFHPGGVDMLMKAVGRDGTLLF 180


>At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1)
           identical to delta-8 sphingolipid desaturase GI:3819710
           from [Arabidopsis thaliana]; contains Pfam profile
           PF00487: Fatty acid desaturase; contains Pfam profile
           PF00173: Heme/Steroid binding domain
          Length = 449

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 515 DCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 631
           D WI I  +VY++S ++  HPGG  ++L   G+D + AF
Sbjct: 23  DLWIAIQGKVYNVSDWIKTHPGGDTVILNLVGQDVTDAF 61


>At5g35860.1 68418.m04307 hypothetical protein contains Pfam profile
           PF03778: Protein of unknown function (DUF321)
          Length = 179

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 583 WRYNVGVRRPRRKHGFQEFWALSHGC 660
           WR  + +R  R  HGF  FW  ++GC
Sbjct: 6   WRKVIDLRFWRENHGFTFFWRENYGC 31


>At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein
           similar to SP|P70580 Membrane associated progesterone
           receptor component 1 {Rattus norvegicus}; contains Pfam
           profile PF00173: Heme/Steroid binding domain
          Length = 100

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 521 WIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTA 628
           ++ I  RV+D++T    +  GGD  + +AG+DAS A
Sbjct: 21  YVAIKGRVFDVTTGKSFYGSGGDYSM-FAGKDASRA 55


>At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX)
           identical to SP|P55826
          Length = 537

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 506 HPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKALDRFL 682
           HP    +     +Y  S F +  P G  ++L Y G   +T   S     + V+A+DR L
Sbjct: 394 HPRTQGVETLGTIYSSSLFPNRAPPGRILLLNYIGGSTNTGILSKSEGEL-VEAVDRDL 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,278
Number of Sequences: 28952
Number of extensions: 293280
Number of successful extensions: 803
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)