Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20965
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 180 2e-46
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 98 1e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 96 5e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 91 2e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 63 4e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 60 2e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 40 3e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 39 8e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.13
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 30 0.29
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 30 0.38
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.51
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.89
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 28 1.2
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 28 1.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.7
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.7
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.7
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 180 bits (437), Expect = 2e-46
Identities = 79/86 (91%), Positives = 82/86 (95%)
Frame = +2
Query: 251 GKKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 430
G+KDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 431 APLNPKANREKMTQIMFETFNTPAMY 508
APLNPK+NREKMTQI+FETFN PA Y
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFY 133
Score = 127 bits (306), Expect = 2e-30
Identities = 60/64 (93%), Positives = 63/64 (98%)
Frame = +1
Query: 508 LAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 687
+AIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL
Sbjct: 134 VAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 193
Query: 688 TERG 699
ERG
Sbjct: 194 MERG 197
Score = 99.5 bits (237), Expect = 4e-22
Identities = 42/49 (85%), Positives = 48/49 (97%)
Frame = +3
Query: 114 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRR 260
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMG++
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 97.9 bits (233), Expect = 1e-21
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Frame = +2
Query: 254 KKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 430
+KD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Query: 431 APLNPKANREKMTQIMFETFNTPAMYSPSKP 523
PL N+EK+ + +ET N PA+ +P
Sbjct: 113 PPLANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 81.4 bits (192), Expect = 1e-16
Identities = 35/63 (55%), Positives = 51/63 (80%)
Frame = +1
Query: 511 AIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILT 690
++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L
Sbjct: 140 SLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLR 199
Query: 691 ERG 699
+ G
Sbjct: 200 KSG 202
Score = 55.2 bits (127), Expect = 9e-09
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +3
Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 242
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 95.9 bits (228), Expect = 5e-21
Identities = 39/91 (42%), Positives = 63/91 (69%)
Frame = +2
Query: 236 RDGRYGKKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 415
+ G KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 416 VLLTEAPLNPKANREKMTQIMFETFNTPAMY 508
+LLTE P+NP ANREKM + MFE + +Y
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVY 133
Score = 85.4 bits (202), Expect = 7e-18
Identities = 38/64 (59%), Positives = 50/64 (78%)
Frame = +1
Query: 508 LAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 687
+AIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L
Sbjct: 134 VAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLL 193
Query: 688 TERG 699
+G
Sbjct: 194 LRKG 197
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 120 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 224
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 90.6 bits (215), Expect = 2e-19
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 436
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 437 LNPKANREKMTQIMFETFNTPAMY 508
LNP NRE +IMFE+FN +Y
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLY 156
Score = 60.5 bits (140), Expect = 2e-10
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 8/71 (11%)
Frame = +1
Query: 508 LAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 663
+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I + LAGRD+
Sbjct: 157 IAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDV 216
Query: 664 TDYLMKILTER 696
T ++ +L +R
Sbjct: 217 TYFVQSLLRDR 227
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 215
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 62.9 bits (146), Expect = 4e-11
Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +2
Query: 236 RDGRYGKKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 412
RD + + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 413 PVLLTEAPLNPKANREKMTQIMFETFNTPAM 505
P+ +TE NP R MT+++FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 227
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 514 IQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 684
I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G + YL+K+
Sbjct: 151 IDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKL 209
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 60.5 bits (140), Expect = 2e-10
Identities = 27/69 (39%), Positives = 38/69 (55%)
Frame = +2
Query: 302 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 481
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 482 ETFNTPAMY 508
E+ PA Y
Sbjct: 123 ESLRCPATY 131
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 117 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 218
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 33.1 bits (72), Expect = 0.041
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 508 LAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 687
LA Q + +ASG+ T ++D G S IY+G+ L +G + D L + L
Sbjct: 132 LAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTL 191
Query: 688 TERGLLV 708
++ V
Sbjct: 192 RDKNFEV 198
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 1e-07
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 430
++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 431 APLNPKANREKMTQIMFETFNTPAMY 508
NP++ R+++ + FE + PA Y
Sbjct: 109 PSWNPQSVRQQIMEAAFEQLHVPAFY 134
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 117 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 218
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +1
Query: 508 LAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 687
+A + ++ LYA G G+V+D G + PI +G + A +L L GR +T +L +L
Sbjct: 180 IAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLL 239
Query: 688 TE 693
E
Sbjct: 240 RE 241
Score = 32.7 bits (71), Expect = 0.055
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +2
Query: 317 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 484
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 485 TFNTPAMYSPSKP 523
P +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = +1
Query: 559 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 696
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYR 204
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 377 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 499
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/68 (19%), Positives = 36/68 (52%)
Frame = +1
Query: 484 NIQHARHVLAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 663
++ + + +++ + + +G + V+D G + + EG +P++ ++++ G D+
Sbjct: 269 DLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDI 328
Query: 664 TDYLMKIL 687
T MK+L
Sbjct: 329 TLLFMKLL 336
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 30.3 bits (65), Expect = 0.29
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = +2
Query: 380 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYSPSKPCSRCTRPVVPPV 559
Y+EL +A +E P L P PK + + N A + KP S+ TRP +P
Sbjct: 23 YSELPIAYQEIP--LQSLPPYPKVASKLKGVVAGGKENNIASFQ--KPSSKATRPYIPSY 78
Query: 560 SCWTPATVSPTPCP 601
+ T +V P P P
Sbjct: 79 TRLT-YSVPPLPIP 91
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.38
Identities = 23/70 (32%), Positives = 28/70 (40%)
Frame = +3
Query: 480 SKHSTRPPCTRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSR 659
S+ + P RH R R RS HR+ G RR P+R HL R RH + R
Sbjct: 124 SRSRSTSPANRH-RRKEKERTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKR 177
Query: 660 PHRLPHEDPH 689
R H
Sbjct: 178 DDRYERRREH 187
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 521 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 625
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 0.89
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 349 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLLPIPTITP*WRGLPTIEGNTARGASSPAK 170
+P + +V +TSFAL S L PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 169 PALHIP 152
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +3
Query: 558 YRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPH-RLPHEDPHRARLTRSLPPP 722
Y ++ C P +R+ P P + PH R PH PH + PPP
Sbjct: 139 YNPQVQSYCRPEPLSSNHVRSCPPFPPT--QHHHPHTRPPHHPPHPHFHNNNYPPP 192
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 287 SVPHLLHKSPSSHTDHHALMAGPSHDRGEH 198
+VP L P+ HT H + G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 509 SPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 634
+P P T PV P S P+ P P PS++ P PS
Sbjct: 1040 APPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 521 PCSRCTRPVVPPVSCWTPATVSPTPCPST 607
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 247 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 113
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/73 (24%), Positives = 24/73 (32%)
Frame = +2
Query: 413 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYSPSKPCSRCTRPVVPPVSCWTPATVSPT 592
PV T P + + + T + PS S T +PP T
Sbjct: 300 PVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTV 359
Query: 593 PCPSTKDTHSPTP 631
P ST T +P P
Sbjct: 360 PPTSTSSTSTPPP 372
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 419 LLTEAPLNPKANREKMTQIMFETFN 493
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 455 REKMTQIMFETFNTPAMYSPSKPCSRCTRPVVPPVSCW 568
+EK+T IM +P M PSK S C + P V W
Sbjct: 159 KEKVTSIM-----SPQMVDPSKMISSCLSLLQPNVDNW 191
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 253 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 161
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 500 AMYSPSKPCSRCTRPVVPPV-SCWTPATVSPTPCPSTKDTHSPTPSCVWT 646
A Y+PS+ C + PV S T ++++PTP ++ T +PT + T
Sbjct: 824 ACYNPSQ--YGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTT 871
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 500 AMYSPSK-PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPT 628
A Y+PS+ CS + + P T AT + TP P+T T +PT
Sbjct: 913 ACYNPSQYVCSDGS--LSPNTVTTTKATTTFTPTPTTTTTPTPT 954
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 159 TYRSHCLLPTRQLLRRTS*ISEI 91
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 515 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPSCVWT*PV 655
S+ S T P PP + T PA SP P + H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV 948
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,812
Number of Sequences: 5004
Number of extensions: 75831
Number of successful extensions: 266
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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