Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20963
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 58 1e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 58 2e-09
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 58 2e-09
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 57 2e-09
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 56 5e-09
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 51 2e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 49 6e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 49 8e-07
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 48 2e-06
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 46 8e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 45 1e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 45 1e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 45 1e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 44 2e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 44 2e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 43 5e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 42 9e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 41 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 2e-04
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 3e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 40 3e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 40 3e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 7e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 39 7e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.002
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 37 0.003
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.005
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.005
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 36 0.008
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 33 0.033
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.099
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 31 0.23
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 31 0.23
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 30 0.30
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 30 0.40
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.53
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.92
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 1.6
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 27 2.8
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.6
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 8.6
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 8.6
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 58.0 bits (134), Expect = 1e-09
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +2
Query: 317 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATNK 496
++++G L W LR+YF QFG V V+ D +TG S+G+GF+ F +P + +K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 497 QIH 505
+ H
Sbjct: 224 EHH 226
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = +2
Query: 308 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
+ A+++VG + + R +F+QFG V A ++ D+ TG +G+GF+ + + S A +A
Sbjct: 245 KTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENES-AVEA 303
Query: 488 TNKQ 499
T Q
Sbjct: 304 TMSQ 307
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 57.6 bits (133), Expect = 2e-09
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
++VG L+W V + L + F ++G + ARV+ D +G SKGYG+++F +P AA A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAA 320
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATNKQ 499
++VGNL++ L F G +QS R+ D +G KG+G++ F+ +A
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 500 IH 505
H
Sbjct: 428 GH 429
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 57.6 bits (133), Expect = 2e-09
Identities = 32/76 (42%), Positives = 42/76 (55%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATNKQ 499
LYVG L +Q+R YFSQFGPV R+ +R TG SK Y FIEF S A+ +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD-VANVVAET 165
Query: 500 IHTLKVST*VFNCKII 547
+H + + CK+I
Sbjct: 166 MHNYLLYGKLLQCKVI 181
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATNK 496
++VGN+ + V +Q+ E F+Q GPV++ ++V D TG KGYGF EF A A K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRK 67
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 56.0 bits (129), Expect = 5e-09
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
+YVGN+ + + Q+ + F Q GPV+S ++V D +G KGYGF E+ P+ AA A
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATNK 496
+YVGNL W R L + F+ G V AR+ ++ TG SKG+G ++F + + AA + K
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEK 339
Score = 41.9 bits (94), Expect = 9e-05
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +2
Query: 302 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAA 481
T + R+YVGNL++ V +L+E+ Q G V + ++ + GLSKG IE+++ A
Sbjct: 62 TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAEEAR 120
Query: 482 DA 487
A
Sbjct: 121 TA 122
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 49.2 bits (112), Expect = 6e-07
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFT----SPSAAADA 487
L+V NLA+ L +FS GP++ A VV + TG ++GYGF+ F+ + AA +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 488 TNKQIH 505
NK++H
Sbjct: 67 KNKKLH 72
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 460
++V NL + ++L +F QFGP+ A++V D +T S G GFI+F
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 350 GHRQLREYFSQFGPVQSARVVFDRS-TGLSKGYGFIEFTS 466
GHR R G ++ A+V +++ G SKG+GF++F S
Sbjct: 511 GHRLKRG--KSGGVLKQAKVETEKAGAGRSKGFGFMQFIS 548
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.8 bits (111), Expect = 8e-07
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +2
Query: 311 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
A +YVGN+ ++V +L+ +F+ G V ++ D+ TG KG+ +IEF+ PS +A
Sbjct: 54 AQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 302 TARAARLYVGNLAWT-VGH-RQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSA 475
T L+V NL VG+ +QL E FS+FG ++S + ST +SKGYGF+ F+ P
Sbjct: 415 TIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFE 474
Query: 476 AADATN 493
A A N
Sbjct: 475 AVQAIN 480
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 45.6 bits (103), Expect = 8e-06
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +2
Query: 293 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPS 472
M ST+R +Y+ L L Y ++FG V S++ + D T L KGYGF F
Sbjct: 289 MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEK 348
Query: 473 AA 478
+A
Sbjct: 349 SA 350
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 45.2 bits (102), Expect = 1e-05
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF---TSPSAAADAT 490
++V LA + R+L ++F Q GPV+ A++V D+ +G SKG ++EF S AA +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 491 NKQIHTLKV 517
K++ L V
Sbjct: 302 GKRLLGLPV 310
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +2
Query: 317 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATNK 496
RL V N+ + + ++ F FG ++ + D SKG+G+I++ +P +A +A K
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEK 399
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +2
Query: 308 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
+ L++ NL V +L+ FS FG + SA+++ D G SKG+GF+ +T+P A A
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKA 420
Query: 488 TNK 496
+
Sbjct: 421 VTE 423
Score = 42.7 bits (96), Expect = 5e-05
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +2
Query: 311 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADAT 490
+A LYVG L +V L E F+ GPV S RV D T S GY ++ F + A
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 491 NKQIHTL 511
++ +TL
Sbjct: 139 DELNYTL 145
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAA 478
+++ NL + ++ L + FS FG + S +V D G +KGYGF+ F S +A
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESA 221
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +2
Query: 308 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSP 469
R L+VGNL L+ +F + G V S R+ D+++G KGY F+EF +P
Sbjct: 90 RKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 460
L+VGNL + L+E+F Q G ++ R++ TG KG+GF++F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 44.0 bits (99), Expect = 2e-05
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 299 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFI---EFTSP 469
+T A L+VGNL V R L + FS G + A V G SKGYGF+ F +
Sbjct: 94 NTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETA 153
Query: 470 SAAADATNKQ 499
AA +A N Q
Sbjct: 154 DAAIEAMNNQ 163
Score = 33.5 bits (73), Expect = 0.033
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 314 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 460
A +Y+GNL V L E Q GPV + + DR G+GF EF
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 42.7 bits (96), Expect = 5e-05
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 314 ARLYVGNLAWTV--GHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
+ LYV NL TV QL + FS FG + S+ + ++G+SKGYGF+ F AA A
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +2
Query: 311 AARLYVGNLAWTVGHRQLREYFSQFGPVQS 400
++ +YVGN+ + ++ ++FS++G V+S
Sbjct: 16 SSTIYVGNIDSRLSDEEIIKHFSKYGQVES 45
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 41.9 bits (94), Expect = 9e-05
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 460
++VGNLA+ L YF G + R+V D T L KG+ +I+F
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +2
Query: 317 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAA 478
++Y+ NL +G Q+ E FG + S +++ + + G SKG+ F EF +PS A
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDA 364
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +2
Query: 311 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADAT 490
+A L V NL+ +LR+ F +FG +Q + D+ TG +KG+ F+ + A A
Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKAR 260
Query: 491 NK 496
++
Sbjct: 261 DR 262
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 359 QLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATNKQ 499
Q+ + F+ FGPV++ + DR TG KGY IE+ + A A +++
Sbjct: 25 QVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +2
Query: 311 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 460
+A +Y+GNL + + + FS+FG +V D+ TG SKG+ F+++
Sbjct: 30 SAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
L+V +A + +L++ FS+FG V R++ + T S+G+GF+ F++ A A
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSA 158
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 317 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 460
RL+VGNL V L + FS++ + +VV DR G ++G+GF+ F
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSF 77
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 299 STARAARLYVGNLAWTVGHRQLREYF-SQFGPVQSARVVFDRSTGLSKGYGFIEFT 463
S A ++VG+L+ V + F S++ +SA+++ D T +S+GYGF+ FT
Sbjct: 181 SKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
L++G L V +++ ++ G +++ +R TG++ GY F+EF SP A+ A
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA 150
Score = 29.5 bits (63), Expect = 0.53
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 296 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSA 475
A TA + ++VG L+ V +L+ F FG + ++ KG GF++F + +
Sbjct: 298 ADTANST-VFVGGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQFVNRQS 350
Query: 476 AADATNK 496
A A N+
Sbjct: 351 AEIAINQ 357
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 460
+++ L++ + F+++GP++ RVV ++ TG S GY F+ F
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 317 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
RL++ NL ++ L+ F FG ++ + D+ T KG+ +I+F A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
Score = 25.4 bits (53), Expect = 8.6
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 314 ARLYVGNLAWTVGHRQLREYFSQFGPVQSA--RVVFD-RSTG--LSKGYGFIEFTSPSAA 478
A +YV NL ++ + ++ F SA R D + G LS G+GF+EF ++A
Sbjct: 619 ATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASA 678
Query: 479 ADA 487
A
Sbjct: 679 VAA 681
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 37.1 bits (82), Expect = 0.003
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATNKQ 499
L+V L L FS+FG + S +V+ D+ TG S Y FIEF + + A K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 500 IHTLKVST*V---FNCKIIRYSEF 562
+ L + + F+ + RY ++
Sbjct: 306 QNVLIDDSRIHVDFSQSVARYRQY 329
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 36.3 bits (80), Expect = 0.005
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +2
Query: 308 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
R A ++VGNLA +V L F FG + S + + + + Y F+EF P A +A
Sbjct: 4 RKATVHVGNLAPSVTESLLYNAFIPFGEIISV-ALHRKEKAVDRSYAFVEFDEPEDAKEA 62
Query: 488 TNKQIHTL 511
+++
Sbjct: 63 MENMNYSI 70
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +2
Query: 323 YVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
+VGNL++ + L ++F + V S R+V D T S+G+G++EF + + A
Sbjct: 97 HVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAA 149
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGP-VQSARVVFDRSTGLSKGYGFIEFTS 466
++VG+L T L F P SA+++ D TGLS+ YGF+ F+S
Sbjct: 184 IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSS 233
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATN 493
++VG LA + + L+ F FG + + ++ F KG GF++++ SAA A N
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPF------GKGCGFVQYSEKSAAEKAIN 350
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.5 bits (73), Expect = 0.033
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADA 487
+YVGNL++ Q+ FS+ G ++ + DR T G+ F+E+ A D+
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDS 89
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 31.9 bits (69), Expect = 0.099
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATNK 496
+ V NL V + E F +G + + + + L+KGY +IE+ AA+A +K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDK 159
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 30.7 bits (66), Expect = 0.23
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +2
Query: 362 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATNKQIHTL 511
+++YF Q+GP+ +V+ D L + Y F++F + A+ A ++ +T+
Sbjct: 99 VKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKALSEAQNTI 145
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 638 LDSLFNKAADHLRKITNKLDNGQLLELYGLFKQGT 742
+ S F +AA ++++ ++ +LL+LY LFKQ T
Sbjct: 1 MSSTFEQAAADVKELKETPNSDELLKLYALFKQAT 35
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.3 bits (65), Expect = 0.30
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 317 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATN 493
+++V N++ V QLR +F FG V + + TG S G I F S+ + A +
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAAH 153
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 317 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRST--GLSKGYGFIEF 460
R+YVG L+ ++ L FS+FG V + ++ ++ST G + + ++ F
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII-NKSTPVGTIQRFAYLNF 54
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.5 bits (63), Expect = 0.53
Identities = 9/39 (23%), Positives = 25/39 (64%)
Frame = +2
Query: 296 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVV 412
++TA + +++GNL + +++ E F +FG ++ +++
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 0.92
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +2
Query: 320 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSPSAAADATNK 496
+++GNL + ++RE FGP+ ++V +R+ F+ F + +AA A +
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN------IAFVHFLNIAAAIKAVQE 260
Score = 28.7 bits (61), Expect = 0.92
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +2
Query: 293 MASTARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFTSP 469
+A A+R +Y+GN ++ +L+E F +FG ++ V F R K F+ FTS
Sbjct: 406 LAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIE--YVNFFR----EKNCAFVNFTSL 459
Query: 470 SAAADATNK 496
++A +A ++
Sbjct: 460 ASAINAIDR 468
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 432 RPVDRSN-TTLALCTGPNCEKYSRSCRWPTVQARLPTYRRAALAVLAITYNDTI 274
R +D SN +T + T N E+Y R Q+R+ L+++ +TYN I
Sbjct: 913 RLLDASNRSTSSFETSKNMEEYERIDAMAKEQSRICQKLEKELSIIQLTYNSRI 966
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 620 DEDQSPLDSLFNKAADHLRKITNKLDNG 703
DED +D+ + ADH+R +T + +G
Sbjct: 290 DEDVDGIDTAYRVVADHVRTLTFAISDG 317
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -1
Query: 745 FSTLLEQPVQLQKLTIV*FI----CNLSKMVSCFIEQAVQWRLI 626
F L P+ +Q+ TI FI CN M C IE+ + WR +
Sbjct: 326 FFYLDSNPLSIQR-TITHFIKKLVCNECSMHPCDIEEIIAWRTL 368
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 34 LNILCNERW*ACKWSAKEVCIPRKILYKRRHSRNAAQTGLSKLY*RSGDL 183
L+ L E C+ KE+ ++ LY +HS ++ T SKL + DL
Sbjct: 889 LHELLRESQRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDL 938
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 572 FKMAEALPDYPDSDFSDEDQSPLDSLFNKAADHLRKITNKLDNGQLL 712
F ++E DYP S+ + PL N+A LR++ ++L + L
Sbjct: 50 FPVSEDATDYPSGTTSENESLPL----NRAPRSLREVASELAQEETL 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,113
Number of Sequences: 5004
Number of extensions: 55989
Number of successful extensions: 184
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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