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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20962
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...   135   4e-33
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...   135   4e-33
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...   135   4e-33
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...   135   4e-33
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...   135   4e-33
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    85   9e-18
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    43   3e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    41   1e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    40   2e-04
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...    29   0.35 
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   2.5  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    27   2.5  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   5.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   7.5  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    25   7.5  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   9.9  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   9.9  

>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  135 bits (327), Expect = 4e-33
 Identities = 65/69 (94%), Positives = 68/69 (98%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  135 bits (327), Expect = 4e-33
 Identities = 65/69 (94%), Positives = 68/69 (98%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  135 bits (327), Expect = 4e-33
 Identities = 65/69 (94%), Positives = 68/69 (98%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70



 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 30/62 (48%), Positives = 39/62 (62%)
 Frame = +1

Query: 256 TPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 435
           TP           LAVL++YKV+++G + RLRREC    CGA  FMA  +DR YCG+CH 
Sbjct: 87  TPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCHL 144

Query: 436 TM 441
           T+
Sbjct: 145 TL 146


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score =  135 bits (327), Expect = 4e-33
 Identities = 65/69 (94%), Positives = 68/69 (98%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70



 Score =  135 bits (327), Expect = 4e-33
 Identities = 65/69 (94%), Positives = 68/69 (98%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 78  QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 138 QKESTLHLV 146



 Score =  135 bits (327), Expect = 4e-33
 Identities = 65/69 (94%), Positives = 68/69 (98%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 214 QKESTLHLV 222



 Score =  135 bits (327), Expect = 4e-33
 Identities = 65/69 (94%), Positives = 68/69 (98%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 290 QKESTLHLV 298



 Score =  135 bits (327), Expect = 4e-33
 Identities = 65/69 (94%), Positives = 68/69 (98%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 366 QKESTLHLV 374


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  135 bits (327), Expect = 4e-33
 Identities = 65/69 (94%), Positives = 68/69 (98%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70



 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 30/62 (48%), Positives = 39/62 (62%)
 Frame = +1

Query: 256 TPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 435
           TP           LAVL++YKV+++G + RLRREC    CGA  FMA  +DR YCG+CH 
Sbjct: 87  TPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCHL 144

Query: 436 TM 441
           T+
Sbjct: 145 TL 146


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 84.6 bits (200), Expect = 9e-18
 Identities = 35/68 (51%), Positives = 52/68 (76%)
 Frame = +2

Query: 5   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQ 184
           I VKTLTGK I L+++P+D +  +K ++++KEGIPP+QQRLI+AGKQ+ D +    Y+++
Sbjct: 3   IKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLE 62

Query: 185 KESTLHLV 208
             S LHLV
Sbjct: 63  GGSVLHLV 70


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%)
 Frame = +2

Query: 26  GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 199
           GK   LE+EP++T   +K ++     +PP +Q++I  G QL+D   L    I+  +TL
Sbjct: 10  GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 17/54 (31%), Positives = 33/54 (61%)
 Frame = +2

Query: 29  KTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 190
           K +  +V     I  +K KIQ ++     +Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12  KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +2

Query: 11  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 190
           +K    +   + V+   ++  +K  I     I   +QRLI+AG+ L+D  +L  Y IQ  
Sbjct: 8   IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDG 67

Query: 191 STLHLV 208
            ++HLV
Sbjct: 68  HSIHLV 73


>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 26  GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 205
           GK + ++  P DT+ + K  +  + G  P +  L       +D  TL+DY I    +L +
Sbjct: 11  GKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEM 70


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 188 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 102
           PS +  PRG V+ P+  ++R + +   GF
Sbjct: 17  PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 301 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 459
           V+R Y ++ +N +     R C  E      F  V++D H   KC + ++    D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 432 VTLPAVVTVLHHRHEHSGAALLAC 361
           VTL A+ T+L + H H    L+AC
Sbjct: 402 VTLKAIETLLENTHSHVLPILVAC 425


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 110 PNQQRLIFAGKQLEDGRTLSDYNI 181
           PNQ     AGK+L+  R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 531 RFYLKSIITAVASVPYRLEGTYLFVV 454
           RF +KS  T ++S  Y+LE  Y F V
Sbjct: 112 RFLMKSNDTILSSTDYQLEWNYCFDV 137


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 87  ILAFTFSMVSDGSTSRVMVLPVRVFT 10
           ILAF F     G+T  V VLPV  F+
Sbjct: 182 ILAFGFVNSFSGATDTVRVLPVSQFS 207


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 8   FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 103
           F   LT  T T+E EP+ TI+   ++A++ +K G
Sbjct: 22  FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,386
Number of Sequences: 5004
Number of extensions: 42490
Number of successful extensions: 105
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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