Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20962
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 135 4e-33
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 135 4e-33
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 135 4e-33
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 135 4e-33
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 135 4e-33
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 85 9e-18
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 43 3e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 41 1e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 2e-04
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 29 0.35
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.5
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.5
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 5.7
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 7.5
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 25 7.5
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.9
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 9.9
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 135 bits (327), Expect = 4e-33
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 182 QKESTLHLV 208
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 135 bits (327), Expect = 4e-33
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 182 QKESTLHLV 208
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 135 bits (327), Expect = 4e-33
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 182 QKESTLHLV 208
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
Score = 66.1 bits (154), Expect = 3e-12
Identities = 30/62 (48%), Positives = 39/62 (62%)
Frame = +1
Query: 256 TPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 435
TP LAVL++YKV+++G + RLRREC CGA FMA +DR YCG+CH
Sbjct: 87 TPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCHL 144
Query: 436 TM 441
T+
Sbjct: 145 TL 146
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 135 bits (327), Expect = 4e-33
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 182 QKESTLHLV 208
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
Score = 135 bits (327), Expect = 4e-33
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Query: 182 QKESTLHLV 208
QKESTLHLV
Sbjct: 138 QKESTLHLV 146
Score = 135 bits (327), Expect = 4e-33
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Query: 182 QKESTLHLV 208
QKESTLHLV
Sbjct: 214 QKESTLHLV 222
Score = 135 bits (327), Expect = 4e-33
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Query: 182 QKESTLHLV 208
QKESTLHLV
Sbjct: 290 QKESTLHLV 298
Score = 135 bits (327), Expect = 4e-33
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
Query: 182 QKESTLHLV 208
QKESTLHLV
Sbjct: 366 QKESTLHLV 374
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 135 bits (327), Expect = 4e-33
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 182 QKESTLHLV 208
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
Score = 66.1 bits (154), Expect = 3e-12
Identities = 30/62 (48%), Positives = 39/62 (62%)
Frame = +1
Query: 256 TPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 435
TP LAVL++YKV+++G + RLRREC CGA FMA +DR YCG+CH
Sbjct: 87 TPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCHL 144
Query: 436 TM 441
T+
Sbjct: 145 TL 146
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 84.6 bits (200), Expect = 9e-18
Identities = 35/68 (51%), Positives = 52/68 (76%)
Frame = +2
Query: 5 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQ 184
I VKTLTGK I L+++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ D + Y+++
Sbjct: 3 IKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLE 62
Query: 185 KESTLHLV 208
S LHLV
Sbjct: 63 GGSVLHLV 70
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 26 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 199
GK LE+EP++T +K ++ +PP +Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 40.7 bits (91), Expect = 1e-04
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +2
Query: 29 KTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 190
K + +V I +K KIQ ++ +Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +2
Query: 11 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 190
+K + + V+ ++ +K I I +QRLI+AG+ L+D +L Y IQ
Sbjct: 8 IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDG 67
Query: 191 STLHLV 208
++HLV
Sbjct: 68 HSIHLV 73
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 29.5 bits (63), Expect = 0.35
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +2
Query: 26 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 205
GK + ++ P DT+ + K + + G P + L +D TL+DY I +L +
Sbjct: 11 GKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEM 70
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 188 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 102
PS + PRG V+ P+ ++R + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 301 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 459
V+R Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 432 VTLPAVVTVLHHRHEHSGAALLAC 361
VTL A+ T+L + H H L+AC
Sbjct: 402 VTLKAIETLLENTHSHVLPILVAC 425
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 110 PNQQRLIFAGKQLEDGRTLSDYNI 181
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 531 RFYLKSIITAVASVPYRLEGTYLFVV 454
RF +KS T ++S Y+LE Y F V
Sbjct: 112 RFLMKSNDTILSSTDYQLEWNYCFDV 137
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 87 ILAFTFSMVSDGSTSRVMVLPVRVFT 10
ILAF F G+T V VLPV F+
Sbjct: 182 ILAFGFVNSFSGATDTVRVLPVSQFS 207
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 8 FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 103
F LT T T+E EP+ TI+ ++A++ +K G
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,386
Number of Sequences: 5004
Number of extensions: 42490
Number of successful extensions: 105
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -