Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20962
         (556 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    141   2e-35
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    27   0.31 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   2.9  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   3.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   5.1  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   8.9  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    23   8.9  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    23   8.9  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  141 bits (341), Expect = 2e-35
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70



 Score =  141 bits (341), Expect = 2e-35
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 78  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 138 QKESTLHLV 146



 Score =  141 bits (341), Expect = 2e-35
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +2

Query: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 154 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213

Query: 182 QKESTLHLV 208
           QKESTLHLV
Sbjct: 214 QKESTLHLV 222


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 0.31
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 552 LSSDTVSRFYLKSIITAVA-SVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394
           L S TV    +  +IT  + +VP  L GTY   ++F    +V L  VV   HHR
Sbjct: 270 LVSQTVFSLLVGHVITKTSEAVP--LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 269 IFLGVSNSSSCVS*RHH 219
           IFL VS+SS C+S +H+
Sbjct: 708 IFLPVSSSSDCMSLQHY 724


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 480 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394
           L GTY   ++F    +V L  VV   HHR
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 228 LRNARRRITHTQEDQAQEEEGQTSR 302
           +RNA  R+T  Q+D  Q E+    R
Sbjct: 405 MRNASERVTRIQKDARQIEQDLQER 429


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 453 VFEDHRAVTLPAVVTVLHHRHE 388
           +F DHR    PA V  L   HE
Sbjct: 903 IFIDHRGHKAPAAVVGLQFLHE 924


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 498 ASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHSG 379
           +S+  +L  T + V+ F DH+A+T+   +    +R  ++G
Sbjct: 207 SSLETQLRTTDMHVLSFSDHKALTVRLCLPTPPNRLTNNG 246


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 163 PLGLQYPEGIHPPPGV 210
           P G+  P G H PPG+
Sbjct: 5   PPGVNRPPGSHRPPGL 20


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,742
Number of Sequences: 2352
Number of extensions: 11922
Number of successful extensions: 33
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51722361
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)