BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20962 (556 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L36067-1|AAA29362.1| 229|Anopheles gambiae polyubiquitin protein. 141 2e-35 AY705401-1|AAU12510.1| 490|Anopheles gambiae nicotinic acetylch... 27 0.31 M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles ... 24 2.9 AY705400-1|AAU12509.1| 490|Anopheles gambiae nicotinic acetylch... 24 3.9 AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. 23 5.1 EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc... 23 8.9 AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p... 23 8.9 AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein p... 23 8.9 >L36067-1|AAA29362.1| 229|Anopheles gambiae polyubiquitin protein. Length = 229 Score = 141 bits (341), Expect = 2e-35 Identities = 68/69 (98%), Positives = 69/69 (100%) Frame = +2 Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61 Query: 182 QKESTLHLV 208 QKESTLHLV Sbjct: 62 QKESTLHLV 70 Score = 141 bits (341), Expect = 2e-35 Identities = 68/69 (98%), Positives = 69/69 (100%) Frame = +2 Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI Sbjct: 78 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137 Query: 182 QKESTLHLV 208 QKESTLHLV Sbjct: 138 QKESTLHLV 146 Score = 141 bits (341), Expect = 2e-35 Identities = 68/69 (98%), Positives = 69/69 (100%) Frame = +2 Query: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 181 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI Sbjct: 154 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213 Query: 182 QKESTLHLV 208 QKESTLHLV Sbjct: 214 QKESTLHLV 222 >AY705401-1|AAU12510.1| 490|Anopheles gambiae nicotinic acetylcholine receptor subunitalpha 6 protein. Length = 490 Score = 27.5 bits (58), Expect = 0.31 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = -2 Query: 552 LSSDTVSRFYLKSIITAVA-SVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394 L S TV + +IT + +VP L GTY ++F +V L VV HHR Sbjct: 270 LVSQTVFSLLVGHVITKTSEAVP--LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321 >M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles gambiae T1 retroposon. ). Length = 975 Score = 24.2 bits (50), Expect = 2.9 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -3 Query: 269 IFLGVSNSSSCVS*RHH 219 IFL VS+SS C+S +H+ Sbjct: 708 IFLPVSSSSDCMSLQHY 724 >AY705400-1|AAU12509.1| 490|Anopheles gambiae nicotinic acetylcholine receptor subunitalpha 6 protein. Length = 490 Score = 23.8 bits (49), Expect = 3.9 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -2 Query: 480 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394 L GTY ++F +V L VV HHR Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321 >AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. Length = 1133 Score = 23.4 bits (48), Expect = 5.1 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +3 Query: 228 LRNARRRITHTQEDQAQEEEGQTSR 302 +RNA R+T Q+D Q E+ R Sbjct: 405 MRNASERVTRIQKDARQIEQDLQER 429 >EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium channel alpha2-delta subunit 1 protein. Length = 1256 Score = 22.6 bits (46), Expect = 8.9 Identities = 10/22 (45%), Positives = 11/22 (50%) Frame = -2 Query: 453 VFEDHRAVTLPAVVTVLHHRHE 388 +F DHR PA V L HE Sbjct: 903 IFIDHRGHKAPAAVVGLQFLHE 924 >AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein protein. Length = 1077 Score = 22.6 bits (46), Expect = 8.9 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = -2 Query: 498 ASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHSG 379 +S+ +L T + V+ F DH+A+T+ + +R ++G Sbjct: 207 SSLETQLRTTDMHVLSFSDHKALTVRLCLPTPPNRLTNNG 246 >AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein protein. Length = 541 Score = 22.6 bits (46), Expect = 8.9 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = +1 Query: 163 PLGLQYPEGIHPPPGV 210 P G+ P G H PPG+ Sbjct: 5 PPGVNRPPGSHRPPGL 20 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 564,742 Number of Sequences: 2352 Number of extensions: 11922 Number of successful extensions: 33 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 33 length of database: 563,979 effective HSP length: 61 effective length of database: 420,507 effective search space used: 51722361 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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