Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20962
(556 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.51
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.51
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.51
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 23 2.7
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 23 2.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.7
AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synth... 22 4.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.3
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.51
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 519 KSIITAVASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394
+S+ T +VP L G+Y ++F +V L +V + HHR
Sbjct: 245 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.51
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 519 KSIITAVASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394
+S+ T +VP L G+Y ++F +V L +V + HHR
Sbjct: 245 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.51
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 519 KSIITAVASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394
+S+ T +VP L G+Y ++F +V L +V + HHR
Sbjct: 245 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 480 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394
L G+Y ++F +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 480 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394
L G+Y ++F +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 480 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394
L G+Y ++F +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 22.6 bits (46), Expect = 2.7
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = -3
Query: 302 TASLTFFFLCLIFLGVSNSSSCVS*RH 222
++S++F+ C++ LG+ C + +H
Sbjct: 196 SSSISFYVPCIVMLGIYCRLYCYAQKH 222
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 22.6 bits (46), Expect = 2.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 231 RNARRRITHTQEDQAQEEEGQTSRPQVL 314
RN RR+ T + EEE Q + Q +
Sbjct: 127 RNDRRKKTFAAREDNDEEEAQKPKEQYI 154
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 519 KSIITAVASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394
+S+ T +VP L G+Y ++F +V L +V HHR
Sbjct: 313 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLNFHHR 352
>AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synthase
16 kDa proteolipidsubunit protein.
Length = 156
Score = 21.8 bits (44), Expect = 4.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 203 GGGWIPSGYCSPRGYVHLPA 144
GG P GY +G+VHL A
Sbjct: 77 GGLEEPKGYTLFKGFVHLGA 96
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 480 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 394
L G+Y ++F +V L +V HHR
Sbjct: 324 LLGSYFNCIMFMVASSVVLTVLVLNFHHR 352
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,197
Number of Sequences: 438
Number of extensions: 3009
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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