Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20961
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    28   1.3  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    26   5.3  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   9.2  
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...    25   9.2  

>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 180 FEQFLNRILVKLKMNNNEVFSQEEQKSSQ 266
           F++F+N+ L      N EVF Q+ +KS +
Sbjct: 453 FQKFINQTLYDFYQQNPEVFDQKARKSKE 481


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 478 RSFFTELIKYWPRFGRPYFNNNI 410
           RSF + L +YWP+F +P    +I
Sbjct: 233 RSFRSVLDRYWPKFIQPIVEGDI 255


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 530 VLVIAKKLKSLKHICH*P 583
           VL++  +LK+ KH+CH P
Sbjct: 231 VLLLVFQLKTHKHVCHDP 248


>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 398 DEKADVIVKVWSSETRPILDQFS-KETSGMSQDD 496
           DEK DVI+K  + E R + +Q    ET+ +++ D
Sbjct: 86  DEKGDVILKYTADEARTLKNQGELPETAKINETD 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,250
Number of Sequences: 5004
Number of extensions: 45780
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)