Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20961
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9832| Best HMM Match : HCaRG (HMM E-Value=3.5e-19)                  36   0.037
SB_43214| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_59295| Best HMM Match : SET (HMM E-Value=0)                         30   1.8  
SB_11328| Best HMM Match : PAN (HMM E-Value=7.1e-06)                   29   3.2  
SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_16856| Best HMM Match : HCaRG (HMM E-Value=1.1e-34)                 28   7.4  

>SB_9832| Best HMM Match : HCaRG (HMM E-Value=3.5e-19)
          Length = 165

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 126 TPGLTKGIHLINLLELSRFEQFLNRILVKLKMNNNEVFSQEEQKSSQ 266
           T  L   + LIN ++ SRF   L RI+ KL + +   F+ EE++  Q
Sbjct: 8   TAKLRTAVQLINNIDTSRFPLLLTRIVQKLHLRDENAFTAEEEEKLQ 54



 Score = 31.5 bits (68), Expect = 0.60
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 356 PLTLRTDLKSLGLCDEKADVIVKVWSSETRPILDQFSKETSGMSQDD 496
           P  L+  L++L L D+K + IV+VW +  + ++D+  K +    Q D
Sbjct: 85  PQGLQQQLQNLNLEDDKVNSIVEVWVASGKSLIDKLRKRSLAPVQLD 131


>SB_43214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = -1

Query: 447 GLVSEDHTLTITSAFSSHNPRLFKSVLNVSGTKMNFNIFFNKYFNVLIHITKLSSSTLNN 268
           GL+     L   SA + H PRL   + N   T M   IF N    +++        TL N
Sbjct: 273 GLLFSGARLVYVSARNGHMPRLLAMIHNKCQTPMPSIIFMNTIALIMLIPDASEFGTLVN 332

Query: 267 FVSF 256
           + SF
Sbjct: 333 YFSF 336


>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/34 (29%), Positives = 25/34 (73%)
 Frame = +2

Query: 401 EKADVIVKVWSSETRPILDQFSKETSGMSQDDLN 502
           +++DV V++ ++E +P+  + +K+  G S+DD++
Sbjct: 737 DESDVNVEITATEKKPVTPENTKDLKGKSRDDID 770


>SB_11328| Best HMM Match : PAN (HMM E-Value=7.1e-06)
          Length = 435

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 438 SEDHTLTITSAFSSHNPRLFKSVLNVSGTKMNFNIFFNKYFNVLIH 301
           + DH  TI +A  +HNP + +S+L  S  K  FNI      N  IH
Sbjct: 181 NNDHPTTIVNAIITHNPPICQSLLFES--KPGFNIVAIHLGNGSIH 224


>SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 362 TLRTDLKSLGLCDEKADVIVKVWSSETRPILDQFSKETS 478
           +L  +L+ LGL  E    + KV++    P+ D+F +ETS
Sbjct: 88  SLGNELQQLGLPKEHCGALCKVYAESLSPLQDRF-RETS 125


>SB_16856| Best HMM Match : HCaRG (HMM E-Value=1.1e-34)
          Length = 196

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 362 TLRTDLKSLGLCDEKADVIVKVWSSETRPILDQFSKETS 478
           +L  +L+ LGL  E    + KV++    P+ D+F +ETS
Sbjct: 88  SLGNELQQLGLPKEHCGALCKVYAESLSPLQDRF-RETS 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,687,029
Number of Sequences: 59808
Number of extensions: 292880
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)