BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20961 (639 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_9832| Best HMM Match : HCaRG (HMM E-Value=3.5e-19) 36 0.037 SB_43214| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4 SB_59295| Best HMM Match : SET (HMM E-Value=0) 30 1.8 SB_11328| Best HMM Match : PAN (HMM E-Value=7.1e-06) 29 3.2 SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4 SB_16856| Best HMM Match : HCaRG (HMM E-Value=1.1e-34) 28 7.4 >SB_9832| Best HMM Match : HCaRG (HMM E-Value=3.5e-19) Length = 165 Score = 35.5 bits (78), Expect = 0.037 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = +3 Query: 126 TPGLTKGIHLINLLELSRFEQFLNRILVKLKMNNNEVFSQEEQKSSQ 266 T L + LIN ++ SRF L RI+ KL + + F+ EE++ Q Sbjct: 8 TAKLRTAVQLINNIDTSRFPLLLTRIVQKLHLRDENAFTAEEEEKLQ 54 Score = 31.5 bits (68), Expect = 0.60 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = +2 Query: 356 PLTLRTDLKSLGLCDEKADVIVKVWSSETRPILDQFSKETSGMSQDD 496 P L+ L++L L D+K + IV+VW + + ++D+ K + Q D Sbjct: 85 PQGLQQQLQNLNLEDDKVNSIVEVWVASGKSLIDKLRKRSLAPVQLD 131 >SB_43214| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 424 Score = 30.3 bits (65), Expect = 1.4 Identities = 20/64 (31%), Positives = 27/64 (42%) Frame = -1 Query: 447 GLVSEDHTLTITSAFSSHNPRLFKSVLNVSGTKMNFNIFFNKYFNVLIHITKLSSSTLNN 268 GL+ L SA + H PRL + N T M IF N +++ TL N Sbjct: 273 GLLFSGARLVYVSARNGHMPRLLAMIHNKCQTPMPSIIFMNTIALIMLIPDASEFGTLVN 332 Query: 267 FVSF 256 + SF Sbjct: 333 YFSF 336 >SB_59295| Best HMM Match : SET (HMM E-Value=0) Length = 1230 Score = 29.9 bits (64), Expect = 1.8 Identities = 10/34 (29%), Positives = 25/34 (73%) Frame = +2 Query: 401 EKADVIVKVWSSETRPILDQFSKETSGMSQDDLN 502 +++DV V++ ++E +P+ + +K+ G S+DD++ Sbjct: 737 DESDVNVEITATEKKPVTPENTKDLKGKSRDDID 770 >SB_11328| Best HMM Match : PAN (HMM E-Value=7.1e-06) Length = 435 Score = 29.1 bits (62), Expect = 3.2 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = -1 Query: 438 SEDHTLTITSAFSSHNPRLFKSVLNVSGTKMNFNIFFNKYFNVLIH 301 + DH TI +A +HNP + +S+L S K FNI N IH Sbjct: 181 NNDHPTTIVNAIITHNPPICQSLLFES--KPGFNIVAIHLGNGSIH 224 >SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 196 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +2 Query: 362 TLRTDLKSLGLCDEKADVIVKVWSSETRPILDQFSKETS 478 +L +L+ LGL E + KV++ P+ D+F +ETS Sbjct: 88 SLGNELQQLGLPKEHCGALCKVYAESLSPLQDRF-RETS 125 >SB_16856| Best HMM Match : HCaRG (HMM E-Value=1.1e-34) Length = 196 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +2 Query: 362 TLRTDLKSLGLCDEKADVIVKVWSSETRPILDQFSKETS 478 +L +L+ LGL E + KV++ P+ D+F +ETS Sbjct: 88 SLGNELQQLGLPKEHCGALCKVYAESLSPLQDRF-RETS 125 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,687,029 Number of Sequences: 59808 Number of extensions: 292880 Number of successful extensions: 628 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 596 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 628 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1608851125 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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