Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20961
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +3

Query: 123 ITPGLTKGIHLINLLELSRFEQFLNRILVKLKMNNNEVFSQEEQKSSQNCLKSTKKA 293
           I PG+T G+H+++      +    +   V+  ++N ++   E    S   +K T  A
Sbjct: 11  ILPGITIGVHILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASA 67


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +3

Query: 123 ITPGLTKGIHLINLLELSRFEQFLNRILVKLKMNNNEVFSQEEQKSSQNCLKSTKKA 293
           I PG+T G+H+++      +    +   V+  ++N ++   E    S   +K T  A
Sbjct: 101 ILPGITIGVHILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASA 157


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 58  KILRIAWIQYIWKERC 105
           +IL + W+  IW+  C
Sbjct: 77  RILDVDWLHNIWRPDC 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,739
Number of Sequences: 438
Number of extensions: 2921
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)