Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20961
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17900.1 68417.m02668 zinc-binding family protein similar to ...    28   4.5  
At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR ...    28   4.5  
At3g11010.1 68416.m01329 disease resistance family protein / LRR...    28   6.0  

>At4g17900.1 68417.m02668 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 227

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 499 KFHRKLNAELSSGYCKK-TKIPKAYLSLTNHKDHTEIELTHSELYSM 636
           KFH   +    + YC   T  P   L L +HKDH  I++  S  + +
Sbjct: 50  KFHGDSHKSECNMYCLDCTNGPLCSLCLAHHKDHRTIQIRRSSYHDV 96


>At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 893

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 141 KGIHLINLLELSRFEQFLNRILVKLKMNNNEVFSQEEQK 257
           KG+HL N L+  +F  FL+ +  K+++ N  V     QK
Sbjct: 243 KGVHLFNFLKNKKFVLFLDDLWDKVELANIGVPDPRTQK 281


>At3g11010.1 68416.m01329 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 894

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = -1

Query: 456 SSIGLVSEDHTLTIT-SAFSSHNPRLFKSVLNVSGTKMNFNIFFNKYFNVLIHITKLSSS 280
           SSIG +S+   L ++ + F    P  F ++  ++   ++FN     + NVL+++T LS  
Sbjct: 196 SSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNVLLNLTGLSVV 255

Query: 279 TLNN 268
           +L+N
Sbjct: 256 SLSN 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,961,811
Number of Sequences: 28952
Number of extensions: 216390
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)