Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20960
(550 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;... 101 1e-20
UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F, puta... 95 7e-19
UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotei... 95 7e-19
UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf prot... 95 1e-18
UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20... 95 1e-18
UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotei... 89 5e-17
UniRef50_Q010Y9 Cluster: Ypt/Rab GTPase activating protein; n=13... 86 6e-16
UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F, puta... 70 4e-11
UniRef50_A6S0C4 Cluster: Predicted protein; n=2; Ascomycota|Rep:... 67 3e-10
UniRef50_Q6BPY4 Cluster: Debaryomyces hansenii chromosome E of s... 66 4e-10
UniRef50_A7EAP1 Cluster: Putative uncharacterized protein; n=2; ... 65 9e-10
UniRef50_Q6CPH1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 60 3e-08
UniRef50_P54999 Cluster: Small nuclear ribonucleoprotein F; n=11... 60 4e-08
UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm... 58 1e-07
UniRef50_A4HNB4 Cluster: Sm-f snRNP core complex protein, putati... 54 3e-06
UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm... 53 5e-06
UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;... 52 9e-06
UniRef50_Q7RMQ6 Cluster: Putative uncharacterized protein PY0212... 52 9e-06
UniRef50_A2EH12 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 49 6e-05
UniRef50_Q758M9 Cluster: AEL274Cp; n=1; Eremothecium gossypii|Re... 49 6e-05
UniRef50_A1CE19 Cluster: LSM domain protein; n=3; Trichocomaceae... 49 6e-05
UniRef50_Q4N728 Cluster: U6 small nuclear ribonucleoprotein, put... 48 1e-04
UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;... 48 1e-04
UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albica... 48 2e-04
UniRef50_Q3LWJ8 Cluster: MRNA splicing factor snRNP-F; n=1; Bige... 47 3e-04
UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm... 47 3e-04
UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F, puta... 46 8e-04
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 45 0.001
UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm... 45 0.001
UniRef50_A7F5M4 Cluster: Putative uncharacterized protein; n=4; ... 45 0.001
UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear ri... 45 0.001
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 44 0.003
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 44 0.003
UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1; T... 42 0.012
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 42 0.012
UniRef50_Q00UL7 Cluster: Putative Sm protein F; n=1; Ostreococcu... 41 0.016
UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 41 0.016
UniRef50_UPI00015BACE3 Cluster: Like-Sm ribonucleoprotein, core;... 41 0.022
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 40 0.029
UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2; T... 40 0.029
UniRef50_Q75BR7 Cluster: ACR204Cp; n=2; Saccharomycetales|Rep: A... 40 0.050
UniRef50_Q06406 Cluster: U6 snRNA-associated Sm-like protein LSm... 40 0.050
UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11; E... 39 0.066
UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein... 38 0.15
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 38 0.15
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 38 0.20
UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2; ... 37 0.35
UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;... 37 0.35
UniRef50_Q8ZVU2 Cluster: Small nuclear ribonucleoprotein homolog... 36 0.82
UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog... 35 1.1
UniRef50_A1ZD45 Cluster: Secreted enzyme, contains two amidohydr... 35 1.4
UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1; ... 34 1.9
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 34 2.5
UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 34 2.5
UniRef50_P40070 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 3.3
UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole gen... 33 4.4
UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1; ... 33 4.4
UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like pr... 33 4.4
UniRef50_UPI000156133C Cluster: PREDICTED: similar to LSM4 homol... 33 5.8
UniRef50_Q4UBR6 Cluster: U6 snrna-associated sm-like protein lsm... 33 5.8
UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative; ... 33 5.8
UniRef50_Q1E7Q6 Cluster: Putative uncharacterized protein; n=1; ... 33 5.8
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 33 5.8
UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 5.8
UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 5.8
>UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;
Fungi/Metazoa group|Rep: Small nuclear ribonucleoprotein
F - Drosophila melanogaster (Fruit fly)
Length = 88
Score = 101 bits (241), Expect = 1e-20
Identities = 44/55 (80%), Positives = 49/55 (89%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
INPKPFLN LTGK VLVKLKWG EYKG LVS DGYMN+QLANTEE+++G+ TGNL
Sbjct: 7 INPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNL 61
Score = 34.7 bits (76), Expect = 1.4
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRGAD 305
GEVLIRCNNVLY++G +
Sbjct: 62 GEVLIRCNNVLYIKGME 78
>UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F,
putative, expressed; n=5; Oryza sativa|Rep: Small
nuclear ribonucleoprotein F, putative, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 86
Score = 95.5 bits (227), Expect = 7e-19
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFLN+LTGK V+VKLKWG EYKG LVS D YMNLQLANTEE +DG +GNL
Sbjct: 6 VNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 60
Score = 34.3 bits (75), Expect = 1.9
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRG 299
GE+LIRCNNVLY+RG
Sbjct: 61 GEILIRCNNVLYLRG 75
>UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotein
F; n=7; Magnoliophyta|Rep: Probable small nuclear
ribonucleoprotein F - Arabidopsis thaliana (Mouse-ear
cress)
Length = 88
Score = 95.5 bits (227), Expect = 7e-19
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFLN+LTGK+V+VKLKWG EYKG L S D YMNLQL NTEE +DG TGNL
Sbjct: 6 VNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60
Score = 35.5 bits (78), Expect = 0.82
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRG 299
GE+LIRCNNVLYVRG
Sbjct: 61 GEILIRCNNVLYVRG 75
>UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf
protein; n=1; Mus musculus|Rep: PREDICTED: similar to
Snrpf protein - Mus musculus
Length = 209
Score = 95.1 bits (226), Expect = 1e-18
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L
Sbjct: 128 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 182
Score = 36.3 bits (80), Expect = 0.47
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRGAD 305
GEVLIRCNNVLY+RG +
Sbjct: 183 GEVLIRCNNVLYIRGVE 199
>UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20;
Euteleostomi|Rep: Small nuclear ribonucleoprotein F -
Homo sapiens (Human)
Length = 86
Score = 95.1 bits (226), Expect = 1e-18
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59
Score = 36.3 bits (80), Expect = 0.47
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRGAD 305
GEVLIRCNNVLY+RG +
Sbjct: 60 GEVLIRCNNVLYIRGVE 76
>UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotein
F; n=13; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein F - Caenorhabditis elegans
Length = 85
Score = 89.4 bits (212), Expect = 5e-17
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFLNSLTGK V+ KLKWG EYKG+LV+ D YMNLQLA+ EE +DG GNL
Sbjct: 7 VNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNL 61
Score = 35.1 bits (77), Expect = 1.1
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRGAD 305
GE+LIRCNNVLYV G D
Sbjct: 62 GEILIRCNNVLYVGGVD 78
>UniRef50_Q010Y9 Cluster: Ypt/Rab GTPase activating protein; n=13;
Eukaryota|Rep: Ypt/Rab GTPase activating protein -
Ostreococcus tauri
Length = 836
Score = 85.8 bits (203), Expect = 6e-16
Identities = 39/55 (70%), Positives = 44/55 (80%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
INPKPFL +LTGK V V+LKWG EY+G LVSTD YMNLQLA+TEE +DG G L
Sbjct: 762 INPKPFLAALTGKRVAVRLKWGMEYRGFLVSTDAYMNLQLASTEEYIDGELQGAL 816
Score = 34.7 bits (76), Expect = 1.4
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRGAD 305
GEVLIRCNNV+Y+RG +
Sbjct: 817 GEVLIRCNNVMYLRGVE 833
>UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 94
Score = 69.7 bits (163), Expect = 4e-11
Identities = 31/55 (56%), Positives = 37/55 (67%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFL L G++V V LKWG EYKG L S D YMN++L N EE +G G L
Sbjct: 22 LNPKPFLAKLVGQNVFVTLKWGMEYKGFLKSFDSYMNIELENAEEWENGVMKGTL 76
>UniRef50_A6S0C4 Cluster: Predicted protein; n=2; Ascomycota|Rep:
Predicted protein - Botryotinia fuckeliana B05.10
Length = 91
Score = 66.9 bits (156), Expect = 3e-10
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGH--EYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
INP+PFL +L + V+++LKWG EYKG LVS D YMN+QL+ EE +D T L
Sbjct: 6 INPRPFLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQLSGAEEWIDSEMTSTL 62
>UniRef50_Q6BPY4 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 101
Score = 66.5 bits (155), Expect = 4e-10
Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGH-EYKGLLVSTDGYMNLQLANTEELV 231
INPKPFL +L GK V+V+LKW EYKG L+S D YMNLQL T E++
Sbjct: 7 INPKPFLKTLIGKQVIVRLKWNKTEYKGTLISIDNYMNLQLDKTSEVI 54
>UniRef50_A7EAP1 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 223
Score = 65.3 bits (152), Expect = 9e-10
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGH--EYKGLLVSTDGYMNLQLANTEELVDGTCT 246
INP+PFL +L + V+++LKWG EYKG LVS D YMN+QL+ EE +D T
Sbjct: 151 INPRPFLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQLSGAEEWIDSEMT 204
>UniRef50_Q6CPH1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome E of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=2; Saccharomycetaceae|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 112
Score = 60.1 bits (139), Expect = 3e-08
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGH-EYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
INPKPFL+ L K VLV LK+ +YKG LVS D Y NLQL + EE+++ +G +
Sbjct: 9 INPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKV 64
>UniRef50_P54999 Cluster: Small nuclear ribonucleoprotein F; n=11;
Eukaryota|Rep: Small nuclear ribonucleoprotein F -
Saccharomyces cerevisiae (Baker's yeast)
Length = 86
Score = 59.7 bits (138), Expect = 4e-08
Identities = 31/56 (55%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGH-EYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFL L V VKLK+ EY+G LVSTD Y NLQL EE V G G L
Sbjct: 13 VNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTL 68
>UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=33; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Schizosaccharomyces pombe (Fission yeast)
Length = 75
Score = 58.4 bits (135), Expect = 1e-07
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCT 246
+P FLN + GK VL++L G +YKG+L DGYMNL L TEE V+G T
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKT 54
>UniRef50_A4HNB4 Cluster: Sm-f snRNP core complex protein, putative;
n=5; Trypanosomatidae|Rep: Sm-f snRNP core complex
protein, putative - Leishmania braziliensis
Length = 77
Score = 53.6 bits (123), Expect = 3e-06
Identities = 26/43 (60%), Positives = 30/43 (69%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 225
P FL+SL GK VLVK KWG Y+G LVS D +MNLQL + E
Sbjct: 6 PGAFLHSLVGKKVLVKSKWGPVYEGNLVSCDTFMNLQLRDAVE 48
>UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=22; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Homo sapiens (Human)
Length = 80
Score = 52.8 bits (121), Expect = 5e-06
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54
>UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;
Guillardia theta|Rep: Small nuclear ribonucleoprotein F
- Guillardia theta (Cryptomonas phi)
Length = 73
Score = 52.0 bits (119), Expect = 9e-06
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELV 231
+NPK LN+ K+V VKLKWG Y G+ + +D YMN+ L + E++
Sbjct: 1 MNPKNILNNNYNKNVFVKLKWGSSYTGIFIGSDNYMNIILDSCSEVI 47
>UniRef50_Q7RMQ6 Cluster: Putative uncharacterized protein PY02122;
n=1; Plasmodium yoelii yoelii|Rep: Putative
uncharacterized protein PY02122 - Plasmodium yoelii
yoelii
Length = 81
Score = 52.0 bits (119), Expect = 9e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGL 174
+NPKPFLNSL G V++KLKWG EYKG+
Sbjct: 52 LNPKPFLNSLVGNRVIIKLKWGMEYKGI 79
>UniRef50_A2EH12 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 98
Score = 49.2 bits (112), Expect = 6e-05
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGH-EYKGLLVSTDGYMNLQLANTEELVDGTCTG 249
P+ F+ SL K +++KLKW + EY G L+S D MN+ L+ T E V G G
Sbjct: 9 PQKFMESLLNKQIVIKLKWENIEYVGTLISFDERMNIHLSETSEYVGGKTEG 60
>UniRef50_Q758M9 Cluster: AEL274Cp; n=1; Eremothecium gossypii|Rep:
AEL274Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 86
Score = 49.2 bits (112), Expect = 6e-05
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVKLKWGH-EYKGLLVSTDGYMNLQLANTEELVDGTCTG 249
NPKPFL L + ++V LK+ + Y+G L+STD Y N++L EE + G
Sbjct: 8 NPKPFLRQLVDQYIVVTLKFNNTRYRGKLMSTDNYFNIRLTEAEEFIGDVSKG 60
>UniRef50_A1CE19 Cluster: LSM domain protein; n=3;
Trichocomaceae|Rep: LSM domain protein - Aspergillus
clavatus
Length = 108
Score = 49.2 bits (112), Expect = 6e-05
Identities = 23/48 (47%), Positives = 30/48 (62%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
+P FL+ + G V VKL G YKG L S DGYMN+ L ++E +DG
Sbjct: 10 DPSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDG 57
>UniRef50_Q4N728 Cluster: U6 small nuclear ribonucleoprotein,
putative; n=3; Aconoidasida|Rep: U6 small nuclear
ribonucleoprotein, putative - Theileria parva
Length = 77
Score = 48.4 bits (110), Expect = 1e-04
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
P ++ S+T K VLVKL G ++KG L S D MNL + NT E +DG
Sbjct: 6 PSAYITSITRKPVLVKLNNGSDFKGTLASLDERMNLAMENTCEFLDG 52
>UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN F - Encephalitozoon cuniculi
Length = 81
Score = 48.0 bits (109), Expect = 1e-04
Identities = 21/44 (47%), Positives = 27/44 (61%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 225
NPK FL + +SV V LKWG Y+G LV++D Y N+ L E
Sbjct: 13 NPKQFLQRMKNRSVRVALKWGQVYEGTLVASDNYFNILLDECTE 56
>UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albicans
CaLSM6; n=3; Ascomycota|Rep: Similar to CA5853|CaLSM6
Candida albicans CaLSM6 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 84
Score = 47.6 bits (108), Expect = 2e-04
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
P FL+ + G SV V+L G EY G L S DGYMN+ L T+E V G
Sbjct: 17 PSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGG 63
>UniRef50_Q3LWJ8 Cluster: MRNA splicing factor snRNP-F; n=1;
Bigelowiella natans|Rep: MRNA splicing factor snRNP-F -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 78
Score = 47.2 bits (107), Expect = 3e-04
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVK-LKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTG 249
NPKPFL +L G+ + + + + + G+LVS D +MN+Q+ NT E + G G
Sbjct: 6 NPKPFLKNLVGEKITIYVILKDYSFNGILVSFDSWMNIQMFNTNESIKGMNIG 58
>UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=2; Pezizomycotina|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 83
Score = 46.8 bits (106), Expect = 3e-04
Identities = 24/48 (50%), Positives = 27/48 (56%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
+P FL + G V VKL G YKG L S DGYMN+ L EE V G
Sbjct: 13 DPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAG 60
>UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 83
Score = 45.6 bits (103), Expect = 8e-04
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
P ++ ++T K V+VKL G ++GLL S D MNL + NT+E DG
Sbjct: 6 PSSYIANITRKPVIVKLNNGTRFRGLLSSLDDRMNLAMENTKEYCDG 52
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +1
Query: 109 LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
L GK VLVKL+ HE +G+L S D ++NL L + EE++DG
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDG 58
>UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm6,
putative; n=1; Filobasidiella neoformans|Rep: U6
snRNA-associated sm-like protein lsm6, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 88
Score = 44.8 bits (101), Expect = 0.001
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 225
+P FL ++ GK V V++ G +Y GLL DGYMN+ L EE
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEE 59
>UniRef50_A7F5M4 Cluster: Putative uncharacterized protein; n=4;
Pezizomycotina|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 95
Score = 44.8 bits (101), Expect = 0.001
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
+P FL+ + G V+VKL +KG L S DGYMN+ L EE V G
Sbjct: 13 DPSSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHG 60
>UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear
ribonucleoprotein; n=2; Thermoprotei|Rep: 90aa long
hypothetical small nuclear ribonucleoprotein -
Sulfolobus tokodaii
Length = 90
Score = 44.8 bits (101), Expect = 0.001
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGT 240
NP L + T K VLVKLK G EY G L +DG MNL L + E +GT
Sbjct: 12 NPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETREGT 60
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 43.6 bits (98), Expect = 0.003
Identities = 24/49 (48%), Positives = 28/49 (57%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGT 240
NP L + K VLVKLK G EY G L +DG MNL L + E +GT
Sbjct: 7 NPLKSLKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCTEYREGT 55
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 43.6 bits (98), Expect = 0.003
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTG 249
+ P L S ++VL+ +K EY G+L D YMN+ L N E+++G G
Sbjct: 8 VKPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKG 60
>UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Thermofilum pendens Hrk 5|Rep: Like-Sm
ribonucleoprotein, core - Thermofilum pendens (strain
Hrk 5)
Length = 100
Score = 41.5 bits (93), Expect = 0.012
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVD 234
+ P L + +GK V VKLK G EY G L TD MNL L + +EL +
Sbjct: 1 MQPIEHLRNQSGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTE 48
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 41.5 bits (93), Expect = 0.012
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
P L + V++KLK E++G+L S D +MNL L + EEL DG T L
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRL 66
>UniRef50_Q00UL7 Cluster: Putative Sm protein F; n=1; Ostreococcus
tauri|Rep: Putative Sm protein F - Ostreococcus tauri
Length = 173
Score = 41.1 bits (92), Expect = 0.016
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYK--------GLLVSTDGYMNLQLANTEE 225
++P FL ++ GK+VLV+L G +Y+ G+L DGYMN+ + TE+
Sbjct: 53 VSPSDFLRAIEGKTVLVRLNSGADYRGARSRRSIGVLACLDGYMNIAMEQTED 105
>UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 91
Score = 41.1 bits (92), Expect = 0.016
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVD 234
P +L S + VLVK+K GHEY G L D MN+ L+N +E D
Sbjct: 11 PLKYLKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEYGD 56
>UniRef50_UPI00015BACE3 Cluster: Like-Sm ribonucleoprotein, core;
n=1; Ignicoccus hospitalis KIN4/I|Rep: Like-Sm
ribonucleoprotein, core - Ignicoccus hospitalis KIN4/I
Length = 91
Score = 40.7 bits (91), Expect = 0.022
Identities = 22/45 (48%), Positives = 27/45 (60%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEEL 228
NP +L + VLV+LK G+EY G LV TD MNL L + EL
Sbjct: 14 NPLKYLRAAVDNVVLVRLKDGNEYVGKLVFTDNTMNLILDDCTEL 58
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 40.3 bits (90), Expect = 0.029
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVD 234
+NP +L + VKLK G EY G LV+TD MNL L + E+ D
Sbjct: 10 VNPFKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVAD 57
>UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2;
Thermoprotei|Rep: Small nuclear ribonucleoprotein -
Cenarchaeum symbiosum
Length = 106
Score = 40.3 bits (90), Expect = 0.029
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGN 252
P L T K+V V+LK EYKG + + D YMNL + + EE D N
Sbjct: 35 PLTALQKSTKKAVTVRLKNETEYKGKMENVDSYMNLIMTDAEEFHDSKVVAN 86
>UniRef50_Q75BR7 Cluster: ACR204Cp; n=2; Saccharomycetales|Rep:
ACR204Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 85
Score = 39.5 bits (88), Expect = 0.050
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +1
Query: 106 FLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 225
FL+++ GK V VKL G Y+G L S DG+MN+ L + E
Sbjct: 16 FLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASE 55
>UniRef50_Q06406 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=4; Saccharomycetaceae|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Saccharomyces cerevisiae (Baker's yeast)
Length = 123
Score = 39.5 bits (88), Expect = 0.050
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +1
Query: 106 FLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLVKF 264
FL+ + GK+V VKL G Y G L S DG+MN+ L++ E + L KF
Sbjct: 52 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKF 104
>UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Pyrococcus furiosus
Length = 76
Score = 39.1 bits (87), Expect = 0.066
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
P ++ K VLV LK G E++G L+ D ++N+ LAN E L DG
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDG 51
>UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 177
Score = 37.9 bits (84), Expect = 0.15
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLAN 216
P L + G ++V+LK G Y GLLV+ D +MN+ L N
Sbjct: 3 PLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKN 42
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 37.9 bits (84), Expect = 0.15
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +1
Query: 118 LTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
L + VL+ LK G E KG+L D +MNL L EE+V G
Sbjct: 18 LNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEIVQG 57
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 37.5 bits (83), Expect = 0.20
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
P LN V+V+LK G E++G L D +MNL L + EE+ +G
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG 51
>UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 67
Score = 36.7 bits (81), Expect = 0.35
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +1
Query: 163 YKGLLVSTDGYMNLQLANTEELVDGTCTGNLVK 261
YKG LVS D YMN+ L + EE +D T G L K
Sbjct: 3 YKGTLVSFDEYMNILLNDCEEWIDNTKKGTLGK 35
>UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN G - Encephalitozoon cuniculi
Length = 78
Score = 36.7 bits (81), Expect = 0.35
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 103 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 225
P L SL K ++V++ GH KGLL D +MN+ L+ E
Sbjct: 7 PNLASLLHKRIVVRIGGGHTLKGLLTGYDAFMNIVLSEVTE 47
>UniRef50_Q8ZVU2 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 144
Score = 35.5 bits (78), Expect = 0.82
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 109 LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLAN 216
LN+L G+ V V L G YKG+L + D +N+ LAN
Sbjct: 16 LNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLAN 51
>UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 85
Score = 35.1 bits (77), Expect = 1.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 94 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEEL 228
+P L + K ++ +LK G KG+L + DG MNL L + EL
Sbjct: 11 SPIKVLTKMLNKEIIARLKGGVAVKGVLTAYDGCMNLVLNDAAEL 55
>UniRef50_A1ZD45 Cluster: Secreted enzyme, contains two
amidohydrolase related domains; n=1; Microscilla marina
ATCC 23134|Rep: Secreted enzyme, contains two
amidohydrolase related domains - Microscilla marina ATCC
23134
Length = 1022
Score = 34.7 bits (76), Expect = 1.4
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 112 NSLTGKSVLVKLKWGHEYKGLLV-STDGYMNLQL 210
N + G+S L+KLKWG + LL+ TDGY+ L
Sbjct: 682 NPVGGQSALIKLKWGEAPEKLLIPGTDGYIKFAL 715
>UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 187
Score = 34.3 bits (75), Expect = 1.9
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 109 LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
L + TG +LV+LK G GLLV+ D +MNL L
Sbjct: 67 LTAATGHPMLVELKSGETLNGLLVNCDTWMNLTL 100
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 33.9 bits (74), Expect = 2.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLVK 261
I P ++ G + V + E+KG L+ D Y+N+ L N EE + G ++K
Sbjct: 21 ILPLEIIDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEEFDNEGPKGKVIK 77
>UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Caldivirga maquilingensis IC-167|Rep: Like-Sm
ribonucleoprotein, core - Caldivirga maquilingensis
IC-167
Length = 86
Score = 33.9 bits (74), Expect = 2.5
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEEL 228
+ P L + KSV+VKLK G G L D MN+ L + EEL
Sbjct: 10 VQPLRALGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEEL 55
>UniRef50_P40070 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=3; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm4 - Saccharomyces cerevisiae (Baker's yeast)
Length = 187
Score = 33.5 bits (73), Expect = 3.3
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 225
P L + G+ + ++LK G +G+L + D +MNL L+N E
Sbjct: 3 PLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTE 45
>UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_27, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 281
Score = 33.1 bits (72), Expect = 4.4
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + G +LV+LK G Y G LV+ D +MN+ L
Sbjct: 89 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 126
>UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 193
Score = 33.1 bits (72), Expect = 4.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLAN 216
P L + G+ + ++LK G KG+L + D +MNL L++
Sbjct: 3 PLYLLTNAKGQKITIELKNGETIKGVLTNVDNWMNLTLSD 42
>UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm4; n=5; Eukaryota|Rep: Probable U6
snRNA-associated Sm-like protein LSm4 - Oryza sativa
subsp. japonica (Rice)
Length = 147
Score = 33.1 bits (72), Expect = 4.4
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + G +LV+LK G Y G LV+ D +MN+ L
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40
>UniRef50_UPI000156133C Cluster: PREDICTED: similar to LSM4 homolog,
U6 small nuclear RNA associated (S. cerevisiae); n=1;
Equus caballus|Rep: PREDICTED: similar to LSM4 homolog,
U6 small nuclear RNA associated (S. cerevisiae) - Equus
caballus
Length = 196
Score = 32.7 bits (71), Expect = 5.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 48 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 85
>UniRef50_Q4UBR6 Cluster: U6 snrna-associated sm-like protein lsm4,
putative; n=1; Theileria annulata|Rep: U6
snrna-associated sm-like protein lsm4, putative -
Theileria annulata
Length = 105
Score = 32.7 bits (71), Expect = 5.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLAN 216
P L + + L++LK G Y G+L S D +MN+ + N
Sbjct: 4 PLTLLRAGKSQPTLIELKNGETYSGILDSCDAFMNMHMVN 43
>UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative;
n=1; Theileria parva|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 141
Score = 32.7 bits (71), Expect = 5.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLAN 216
P L + + L++LK G Y G+L S D +MN+ + N
Sbjct: 4 PLTLLRAGKSQPTLIELKNGETYSGILDSCDAFMNMHMVN 43
>UniRef50_Q1E7Q6 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 178
Score = 32.7 bits (71), Expect = 5.8
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 106 FLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE 222
F +LT +V+++LK +G+L S D Y+N++L + E
Sbjct: 86 FFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIE 124
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 32.7 bits (71), Expect = 5.8
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEEL 228
+ P L V+V+LK G +G LVS DG++NL L + E+
Sbjct: 1 MRPHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVEI 46
>UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=128; Eukaryota|Rep: U6 snRNA-associated Sm-like
protein LSm4 - Mus musculus (Mouse)
Length = 137
Score = 32.7 bits (71), Expect = 5.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40
>UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=5; Coelomata|Rep: U6 snRNA-associated Sm-like protein
LSm4 - Homo sapiens (Human)
Length = 139
Score = 32.7 bits (71), Expect = 5.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,496,331
Number of Sequences: 1657284
Number of extensions: 7040034
Number of successful extensions: 13102
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 12727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13092
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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