Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20960
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427...    95   2e-20
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460...    82   2e-16
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    33   0.15 
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478...    32   0.35 
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350...    27   7.5  
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996...    27   7.5  
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     27   9.9  

>02_01_0576 -
           4270808-4270871,4271548-4271612,4271717-4271754,
           4272060-4272147,4272507-4272625,4273682-4273721
          Length = 137

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +1

Query: 91  INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
           +NPKPFLN+LTGK V+VKLKWG EYKG LVS D YMNLQLANTEE +DG  +GNL
Sbjct: 57  VNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 111



 Score = 34.3 bits (75), Expect = 0.065
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +3

Query: 255 GEVLIRCNNVLYVRG 299
           GE+LIRCNNVLY+RG
Sbjct: 112 GEILIRCNNVLYLRG 126


>11_06_0609 +
           25444941-25444946,25445678-25445765,25446013-25446048,
           25446069-25446106,25446219-25446283,25446622-25446685
          Length = 98

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 42/67 (62%), Positives = 47/67 (70%), Gaps = 12/67 (17%)
 Frame = +1

Query: 91  INPKPFLNSLTGKSVLVKLKWGHEYK------------GLLVSTDGYMNLQLANTEELVD 234
           +NPKPFLN+LTGK V+VKLKWG EYK            G LVS D YMNLQLANTEE +D
Sbjct: 6   VNPKPFLNNLTGKPVIVKLKWGMEYKVFRFCLTIDYADGYLVSVDSYMNLQLANTEEYID 65

Query: 235 GTCTGNL 255
           G  +GNL
Sbjct: 66  GQFSGNL 72



 Score = 34.3 bits (75), Expect = 0.065
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +3

Query: 255 GEVLIRCNNVLYVRG 299
           GE+LIRCNNVLY+RG
Sbjct: 73  GEILIRCNNVLYLRG 87


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
           P   L +  G  +LV+LK G  Y G LV+ D +MN+ L
Sbjct: 3   PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40


>04_03_0736 -
           19145428-19145474,19145608-19145721,19146707-19147870,
           19150251-19150383
          Length = 485

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 166 KGLLVSTDGYMNLQLANTEELVDG 237
           +G+L   DGYMN+ +  TEE V+G
Sbjct: 432 RGILACLDGYMNIAMEQTEEYVNG 455


>03_06_0769 +
           36134298-36134356,36134740-36134919,36134975-36135007,
           36135008-36135128,36135227-36135266,36135811-36135863,
           36135937-36135998,36136354-36136506,36136949-36137160,
           36137480-36138972,36140560-36141483,36141734-36142043,
           36143818-36143874,36144114-36144167,36144452-36144510
          Length = 1269

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 129 FTR*TIKKWFGIYWHSSRHFCRFL 58
           FTR T+++W+   W  S  F RF+
Sbjct: 73  FTRGTVERWWSFAWLVSGRFVRFV 96


>03_02_0630 +
           9964593-9964738,9965548-9965603,9965895-9966745,
           9966848-9967046,9967246-9967425,9967591-9967967,
           9968625-9968765
          Length = 649

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 109 LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGN 252
           ++++T    L  L  G   KGLL  +  + +  +   +EL +GTC  N
Sbjct: 440 IDAITEHQRLNTLMKGELIKGLLPQSSVHADYTVKRVQELAEGTCLKN 487


>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 133 VLVKLKWGHEYKGLLVSTDGYMNLQLANTEELV 231
           + VKL+   E +G L + D ++N+ L + EE+V
Sbjct: 31  IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIV 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,863,438
Number of Sequences: 37544
Number of extensions: 172494
Number of successful extensions: 286
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)