BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20960 (550 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 95 2e-20 11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 82 2e-16 01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 33 0.15 04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 32 0.35 03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 27 7.5 03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996... 27 7.5 01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 27 9.9 >02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754, 4272060-4272147,4272507-4272625,4273682-4273721 Length = 137 Score = 95.5 bits (227), Expect = 2e-20 Identities = 42/55 (76%), Positives = 47/55 (85%) Frame = +1 Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255 +NPKPFLN+LTGK V+VKLKWG EYKG LVS D YMNLQLANTEE +DG +GNL Sbjct: 57 VNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 111 Score = 34.3 bits (75), Expect = 0.065 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = +3 Query: 255 GEVLIRCNNVLYVRG 299 GE+LIRCNNVLY+RG Sbjct: 112 GEILIRCNNVLYLRG 126 >11_06_0609 + 25444941-25444946,25445678-25445765,25446013-25446048, 25446069-25446106,25446219-25446283,25446622-25446685 Length = 98 Score = 82.2 bits (194), Expect = 2e-16 Identities = 42/67 (62%), Positives = 47/67 (70%), Gaps = 12/67 (17%) Frame = +1 Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYK------------GLLVSTDGYMNLQLANTEELVD 234 +NPKPFLN+LTGK V+VKLKWG EYK G LVS D YMNLQLANTEE +D Sbjct: 6 VNPKPFLNNLTGKPVIVKLKWGMEYKVFRFCLTIDYADGYLVSVDSYMNLQLANTEEYID 65 Query: 235 GTCTGNL 255 G +GNL Sbjct: 66 GQFSGNL 72 Score = 34.3 bits (75), Expect = 0.065 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = +3 Query: 255 GEVLIRCNNVLYVRG 299 GE+LIRCNNVLY+RG Sbjct: 73 GEILIRCNNVLYLRG 87 >01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283, 8561377-8561642,8561967-8562111,8562411-8562530, 8562611-8562930,8564161-8564341,8564434-8564580, 8565186-8565497,8566303-8566450,8566592-8566765, 8567385-8567446,8567499-8567571,8567628-8567683, 8568370-8568645,8569541-8569588,8569870-8569991, 8570258-8570413,8571037-8571079,8572624-8572701, 8572972-8573070,8573168-8573209,8573302-8573304 Length = 1264 Score = 33.1 bits (72), Expect = 0.15 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210 P L + G +LV+LK G Y G LV+ D +MN+ L Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40 >04_03_0736 - 19145428-19145474,19145608-19145721,19146707-19147870, 19150251-19150383 Length = 485 Score = 31.9 bits (69), Expect = 0.35 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 Query: 166 KGLLVSTDGYMNLQLANTEELVDG 237 +G+L DGYMN+ + TEE V+G Sbjct: 432 RGILACLDGYMNIAMEQTEEYVNG 455 >03_06_0769 + 36134298-36134356,36134740-36134919,36134975-36135007, 36135008-36135128,36135227-36135266,36135811-36135863, 36135937-36135998,36136354-36136506,36136949-36137160, 36137480-36138972,36140560-36141483,36141734-36142043, 36143818-36143874,36144114-36144167,36144452-36144510 Length = 1269 Score = 27.5 bits (58), Expect = 7.5 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -2 Query: 129 FTR*TIKKWFGIYWHSSRHFCRFL 58 FTR T+++W+ W S F RF+ Sbjct: 73 FTRGTVERWWSFAWLVSGRFVRFV 96 >03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745, 9966848-9967046,9967246-9967425,9967591-9967967, 9968625-9968765 Length = 649 Score = 27.5 bits (58), Expect = 7.5 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +1 Query: 109 LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGN 252 ++++T L L G KGLL + + + + +EL +GTC N Sbjct: 440 IDAITEHQRLNTLMKGELIKGLLPQSSVHADYTVKRVQELAEGTCLKN 487 >01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 Length = 104 Score = 27.1 bits (57), Expect = 9.9 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +1 Query: 133 VLVKLKWGHEYKGLLVSTDGYMNLQLANTEELV 231 + VKL+ E +G L + D ++N+ L + EE+V Sbjct: 31 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIV 63 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,863,438 Number of Sequences: 37544 Number of extensions: 172494 Number of successful extensions: 286 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 280 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 285 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1233951264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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