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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20960
         (550 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85372-1|CAA59688.1|   86|Homo sapiens Sm protein F protein.           95   1e-19
CR456751-1|CAG33032.1|   86|Homo sapiens SNRPF protein.                95   1e-19
BC128453-1|AAI28454.1|   86|Homo sapiens small nuclear ribonucle...    95   1e-19
BC128452-1|AAI28453.1|   86|Homo sapiens small nuclear ribonucle...    95   1e-19
BC063397-1|AAH63397.2|   86|Homo sapiens SNRPF protein protein.        95   1e-19
BC002505-1|AAH02505.3|   86|Homo sapiens small nuclear ribonucle...    95   1e-19
BC016026-1|AAH16026.1|   80|Homo sapiens LSM6 homolog, U6 small ...    53   8e-07
AJ238098-1|CAB45869.1|   80|Homo sapiens Lsm6 protein protein.         53   8e-07
AF182292-1|AAD56230.1|   80|Homo sapiens U6 snRNA-associated Sm-...    53   8e-07
AC097372-1|AAY41032.1|   80|Homo sapiens unknown protein.              53   8e-07
BC023665-1|AAH23665.1|  139|Homo sapiens LSM4 homolog, U6 small ...    33   0.87 
BC022198-1|AAH22198.1|  139|Homo sapiens LSM4 homolog, U6 small ...    33   0.87 
BC003652-1|AAH03652.1|  139|Homo sapiens LSM4 homolog, U6 small ...    33   0.87 
BC000387-1|AAH00387.1|  139|Homo sapiens LSM4 homolog, U6 small ...    33   0.87 
AJ238096-1|CAB45867.1|  139|Homo sapiens Lsm4 protein protein.         33   0.87 
AF251218-1|AAF90055.1|  139|Homo sapiens LSm4 autoantigen protein.     33   0.87 
AF182290-1|AAD56228.1|  139|Homo sapiens U6 snRNA-associated Sm-...    33   0.87 
AF117235-1|AAF17216.1|  139|Homo sapiens glycine-rich protein pr...    33   0.87 

>X85372-1|CAA59688.1|   86|Homo sapiens Sm protein F protein.
          Length = 86

 Score = 95.1 bits (226), Expect = 1e-19
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = +1

Query: 91  INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
           +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG  +G+L
Sbjct: 5   LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59



 Score = 36.3 bits (80), Expect = 0.071
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 255 GEVLIRCNNVLYVRGAD 305
           GEVLIRCNNVLY+RG +
Sbjct: 60  GEVLIRCNNVLYIRGVE 76


>CR456751-1|CAG33032.1|   86|Homo sapiens SNRPF protein.
          Length = 86

 Score = 95.1 bits (226), Expect = 1e-19
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = +1

Query: 91  INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
           +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG  +G+L
Sbjct: 5   LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59



 Score = 36.3 bits (80), Expect = 0.071
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 255 GEVLIRCNNVLYVRGAD 305
           GEVLIRCNNVLY+RG +
Sbjct: 60  GEVLIRCNNVLYIRGVE 76


>BC128453-1|AAI28454.1|   86|Homo sapiens small nuclear
           ribonucleoprotein polypeptide F protein.
          Length = 86

 Score = 95.1 bits (226), Expect = 1e-19
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = +1

Query: 91  INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
           +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG  +G+L
Sbjct: 5   LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59



 Score = 36.3 bits (80), Expect = 0.071
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 255 GEVLIRCNNVLYVRGAD 305
           GEVLIRCNNVLY+RG +
Sbjct: 60  GEVLIRCNNVLYIRGVE 76


>BC128452-1|AAI28453.1|   86|Homo sapiens small nuclear
           ribonucleoprotein polypeptide F protein.
          Length = 86

 Score = 95.1 bits (226), Expect = 1e-19
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = +1

Query: 91  INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
           +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG  +G+L
Sbjct: 5   LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59



 Score = 36.3 bits (80), Expect = 0.071
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 255 GEVLIRCNNVLYVRGAD 305
           GEVLIRCNNVLY+RG +
Sbjct: 60  GEVLIRCNNVLYIRGVE 76


>BC063397-1|AAH63397.2|   86|Homo sapiens SNRPF protein protein.
          Length = 86

 Score = 95.1 bits (226), Expect = 1e-19
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = +1

Query: 91  INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
           +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG  +G+L
Sbjct: 5   LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59



 Score = 36.3 bits (80), Expect = 0.071
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 255 GEVLIRCNNVLYVRGAD 305
           GEVLIRCNNVLY+RG +
Sbjct: 60  GEVLIRCNNVLYIRGVE 76


>BC002505-1|AAH02505.3|   86|Homo sapiens small nuclear
           ribonucleoprotein polypeptide F protein.
          Length = 86

 Score = 95.1 bits (226), Expect = 1e-19
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = +1

Query: 91  INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
           +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG  +G+L
Sbjct: 5   LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59



 Score = 36.3 bits (80), Expect = 0.071
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 255 GEVLIRCNNVLYVRGAD 305
           GEVLIRCNNVLY+RG +
Sbjct: 60  GEVLIRCNNVLYIRGVE 76


>BC016026-1|AAH16026.1|   80|Homo sapiens LSM6 homolog, U6 small
           nuclear RNA associated (S. cerevisiae) protein.
          Length = 80

 Score = 52.8 bits (121), Expect = 8e-07
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
           P  FL  + G+ V+VKL  G +Y+G+L   DGYMN+ L  TEE V+G
Sbjct: 8   PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54


>AJ238098-1|CAB45869.1|   80|Homo sapiens Lsm6 protein protein.
          Length = 80

 Score = 52.8 bits (121), Expect = 8e-07
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
           P  FL  + G+ V+VKL  G +Y+G+L   DGYMN+ L  TEE V+G
Sbjct: 8   PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54


>AF182292-1|AAD56230.1|   80|Homo sapiens U6 snRNA-associated
           Sm-like protein LSm6 protein.
          Length = 80

 Score = 52.8 bits (121), Expect = 8e-07
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
           P  FL  + G+ V+VKL  G +Y+G+L   DGYMN+ L  TEE V+G
Sbjct: 8   PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54


>AC097372-1|AAY41032.1|   80|Homo sapiens unknown protein.
          Length = 80

 Score = 52.8 bits (121), Expect = 8e-07
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
           P  FL  + G+ V+VKL  G +Y+G+L   DGYMN+ L  TEE V+G
Sbjct: 8   PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54


>BC023665-1|AAH23665.1|  139|Homo sapiens LSM4 homolog, U6 small
           nuclear RNA associated (S. cerevisiae) protein.
          Length = 139

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
           P   L +     +LV+LK G  Y G LVS D +MN+ L
Sbjct: 3   PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40


>BC022198-1|AAH22198.1|  139|Homo sapiens LSM4 homolog, U6 small
           nuclear RNA associated (S. cerevisiae) protein.
          Length = 139

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
           P   L +     +LV+LK G  Y G LVS D +MN+ L
Sbjct: 3   PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40


>BC003652-1|AAH03652.1|  139|Homo sapiens LSM4 homolog, U6 small
           nuclear RNA associated (S. cerevisiae) protein.
          Length = 139

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
           P   L +     +LV+LK G  Y G LVS D +MN+ L
Sbjct: 3   PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40


>BC000387-1|AAH00387.1|  139|Homo sapiens LSM4 homolog, U6 small
           nuclear RNA associated (S. cerevisiae) protein.
          Length = 139

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
           P   L +     +LV+LK G  Y G LVS D +MN+ L
Sbjct: 3   PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40


>AJ238096-1|CAB45867.1|  139|Homo sapiens Lsm4 protein protein.
          Length = 139

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
           P   L +     +LV+LK G  Y G LVS D +MN+ L
Sbjct: 3   PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40


>AF251218-1|AAF90055.1|  139|Homo sapiens LSm4 autoantigen protein.
          Length = 139

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
           P   L +     +LV+LK G  Y G LVS D +MN+ L
Sbjct: 3   PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40


>AF182290-1|AAD56228.1|  139|Homo sapiens U6 snRNA-associated
           Sm-like protein LSm4 protein.
          Length = 139

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
           P   L +     +LV+LK G  Y G LVS D +MN+ L
Sbjct: 3   PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40


>AF117235-1|AAF17216.1|  139|Homo sapiens glycine-rich protein
           protein.
          Length = 139

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
           P   L +     +LV+LK G  Y G LVS D +MN+ L
Sbjct: 3   PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,666,172
Number of Sequences: 237096
Number of extensions: 1028943
Number of successful extensions: 1159
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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