Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20960
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 95 1e-19
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 95 1e-19
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 95 1e-19
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 95 1e-19
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 95 1e-19
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 95 1e-19
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 53 8e-07
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 53 8e-07
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 53 8e-07
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 53 8e-07
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 33 0.87
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 33 0.87
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 33 0.87
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 33 0.87
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 33 0.87
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 33 0.87
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 33 0.87
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 33 0.87
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 95.1 bits (226), Expect = 1e-19
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59
Score = 36.3 bits (80), Expect = 0.071
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRGAD 305
GEVLIRCNNVLY+RG +
Sbjct: 60 GEVLIRCNNVLYIRGVE 76
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 95.1 bits (226), Expect = 1e-19
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59
Score = 36.3 bits (80), Expect = 0.071
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRGAD 305
GEVLIRCNNVLY+RG +
Sbjct: 60 GEVLIRCNNVLYIRGVE 76
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 95.1 bits (226), Expect = 1e-19
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59
Score = 36.3 bits (80), Expect = 0.071
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRGAD 305
GEVLIRCNNVLY+RG +
Sbjct: 60 GEVLIRCNNVLYIRGVE 76
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 95.1 bits (226), Expect = 1e-19
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59
Score = 36.3 bits (80), Expect = 0.071
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRGAD 305
GEVLIRCNNVLY+RG +
Sbjct: 60 GEVLIRCNNVLYIRGVE 76
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 95.1 bits (226), Expect = 1e-19
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59
Score = 36.3 bits (80), Expect = 0.071
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRGAD 305
GEVLIRCNNVLY+RG +
Sbjct: 60 GEVLIRCNNVLYIRGVE 76
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 95.1 bits (226), Expect = 1e-19
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +1
Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59
Score = 36.3 bits (80), Expect = 0.071
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 255 GEVLIRCNNVLYVRGAD 305
GEVLIRCNNVLY+RG +
Sbjct: 60 GEVLIRCNNVLYIRGVE 76
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 52.8 bits (121), Expect = 8e-07
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 52.8 bits (121), Expect = 8e-07
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 52.8 bits (121), Expect = 8e-07
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 52.8 bits (121), Expect = 8e-07
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 32.7 bits (71), Expect = 0.87
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 32.7 bits (71), Expect = 0.87
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 32.7 bits (71), Expect = 0.87
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 32.7 bits (71), Expect = 0.87
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 32.7 bits (71), Expect = 0.87
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 32.7 bits (71), Expect = 0.87
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 32.7 bits (71), Expect = 0.87
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 32.7 bits (71), Expect = 0.87
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210
P L + +LV+LK G Y G LVS D +MN+ L
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,666,172
Number of Sequences: 237096
Number of extensions: 1028943
Number of successful extensions: 1159
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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