BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20960 (550 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 95 1e-19 CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 95 1e-19 BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 95 1e-19 BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 95 1e-19 BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 95 1e-19 BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 95 1e-19 BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 53 8e-07 AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 53 8e-07 AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 53 8e-07 AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 53 8e-07 BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 33 0.87 BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 33 0.87 BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 33 0.87 BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 33 0.87 AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 33 0.87 AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 33 0.87 AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 33 0.87 AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 33 0.87 >X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. Length = 86 Score = 95.1 bits (226), Expect = 1e-19 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +1 Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255 +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59 Score = 36.3 bits (80), Expect = 0.071 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +3 Query: 255 GEVLIRCNNVLYVRGAD 305 GEVLIRCNNVLY+RG + Sbjct: 60 GEVLIRCNNVLYIRGVE 76 >CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. Length = 86 Score = 95.1 bits (226), Expect = 1e-19 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +1 Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255 +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59 Score = 36.3 bits (80), Expect = 0.071 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +3 Query: 255 GEVLIRCNNVLYVRGAD 305 GEVLIRCNNVLY+RG + Sbjct: 60 GEVLIRCNNVLYIRGVE 76 >BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucleoprotein polypeptide F protein. Length = 86 Score = 95.1 bits (226), Expect = 1e-19 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +1 Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255 +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59 Score = 36.3 bits (80), Expect = 0.071 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +3 Query: 255 GEVLIRCNNVLYVRGAD 305 GEVLIRCNNVLY+RG + Sbjct: 60 GEVLIRCNNVLYIRGVE 76 >BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucleoprotein polypeptide F protein. Length = 86 Score = 95.1 bits (226), Expect = 1e-19 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +1 Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255 +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59 Score = 36.3 bits (80), Expect = 0.071 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +3 Query: 255 GEVLIRCNNVLYVRGAD 305 GEVLIRCNNVLY+RG + Sbjct: 60 GEVLIRCNNVLYIRGVE 76 >BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. Length = 86 Score = 95.1 bits (226), Expect = 1e-19 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +1 Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255 +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59 Score = 36.3 bits (80), Expect = 0.071 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +3 Query: 255 GEVLIRCNNVLYVRGAD 305 GEVLIRCNNVLY+RG + Sbjct: 60 GEVLIRCNNVLYIRGVE 76 >BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucleoprotein polypeptide F protein. Length = 86 Score = 95.1 bits (226), Expect = 1e-19 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +1 Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255 +NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+L Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59 Score = 36.3 bits (80), Expect = 0.071 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +3 Query: 255 GEVLIRCNNVLYVRGAD 305 GEVLIRCNNVLY+RG + Sbjct: 60 GEVLIRCNNVLYIRGVE 76 >BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein. Length = 80 Score = 52.8 bits (121), Expect = 8e-07 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237 P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54 >AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. Length = 80 Score = 52.8 bits (121), Expect = 8e-07 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237 P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54 >AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-like protein LSm6 protein. Length = 80 Score = 52.8 bits (121), Expect = 8e-07 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237 P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54 >AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. Length = 80 Score = 52.8 bits (121), Expect = 8e-07 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237 P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNG 54 >BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein. Length = 139 Score = 32.7 bits (71), Expect = 0.87 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210 P L + +LV+LK G Y G LVS D +MN+ L Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40 >BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein. Length = 139 Score = 32.7 bits (71), Expect = 0.87 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210 P L + +LV+LK G Y G LVS D +MN+ L Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40 >BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein. Length = 139 Score = 32.7 bits (71), Expect = 0.87 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210 P L + +LV+LK G Y G LVS D +MN+ L Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40 >BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein. Length = 139 Score = 32.7 bits (71), Expect = 0.87 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210 P L + +LV+LK G Y G LVS D +MN+ L Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40 >AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. Length = 139 Score = 32.7 bits (71), Expect = 0.87 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210 P L + +LV+LK G Y G LVS D +MN+ L Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40 >AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. Length = 139 Score = 32.7 bits (71), Expect = 0.87 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210 P L + +LV+LK G Y G LVS D +MN+ L Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40 >AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-like protein LSm4 protein. Length = 139 Score = 32.7 bits (71), Expect = 0.87 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210 P L + +LV+LK G Y G LVS D +MN+ L Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40 >AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein protein. Length = 139 Score = 32.7 bits (71), Expect = 0.87 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210 P L + +LV+LK G Y G LVS D +MN+ L Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 61,666,172 Number of Sequences: 237096 Number of extensions: 1028943 Number of successful extensions: 1159 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1159 length of database: 76,859,062 effective HSP length: 86 effective length of database: 56,468,806 effective search space used: 5421005376 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -