Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20960
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    89   1e-18
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    54   9e-08
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    29   1.7  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and inte...    27   6.7  

>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 39/55 (70%), Positives = 45/55 (81%)
 Frame = +1

Query: 91  INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255
           +NPKPFLNSLTGK V+ KLKWG EYKG+LV+ D YMNLQLA+ EE +DG   GNL
Sbjct: 7   VNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNL 61



 Score = 35.1 bits (77), Expect = 0.034
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 255 GEVLIRCNNVLYVRGAD 305
           GE+LIRCNNVLYV G D
Sbjct: 62  GEILIRCNNVLYVGGVD 78


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 24/48 (50%), Positives = 31/48 (64%)
 Frame = +1

Query: 94  NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237
           NP  FL  + GK V+VKL  G +Y+G+L   DGYMN+ L  TEE  +G
Sbjct: 6   NPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNG 53


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 97  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLAN 216
           P   L +     +LV+LK G  Y G L + D +MN+ L +
Sbjct: 4   PLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVD 43


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 36  CISC*PILKTCKNGGC 83
           C +C P+ +TC NGGC
Sbjct: 558 CTNCCPVGQTCMNGGC 573


>Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical
           protein F13B10.1b protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 251 LPVQVPSTSSSVLASCKFM*PSVDTNKPL 165
           +P   PS+S+S+LA  +F  P  + N PL
Sbjct: 101 IPCGSPSSSNSMLAQIQFHPPPTEMNSPL 129


>AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and
           interleukin 1 receptordomain protein isoform f protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 251 LPVQVPSTSSSVLASCKFM*PSVDTNKPL 165
           +P   PS+S+S+LA  +F  P  + N PL
Sbjct: 101 IPCGSPSSSNSMLAQIQFHPPPTEMNSPL 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,236,285
Number of Sequences: 27780
Number of extensions: 176883
Number of successful extensions: 313
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)