BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20960 (550 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta... 95 2e-20 At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 55 4e-08 At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 52 2e-07 At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 33 0.13 At1g35850.1 68414.m04454 pumilio/Puf RNA-binding domain-containi... 28 3.6 >At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, putative / snRNP-F, putative / Sm protein F, putative similar to SWISS-PROT:Q15356 small nuclear ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF) [Mouse] Length = 88 Score = 95.5 bits (227), Expect = 2e-20 Identities = 41/55 (74%), Positives = 46/55 (83%) Frame = +1 Query: 91 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 255 +NPKPFLN+LTGK+V+VKLKWG EYKG L S D YMNLQL NTEE +DG TGNL Sbjct: 6 VNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60 Score = 35.5 bits (78), Expect = 0.024 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = +3 Query: 255 GEVLIRCNNVLYVRG 299 GE+LIRCNNVLYVRG Sbjct: 61 GEILIRCNNVLYVRG 75 >At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6 snRNA-associated Sm-like protein LSm6 [Mus musculus] Length = 91 Score = 54.8 bits (126), Expect = 4e-08 Identities = 24/47 (51%), Positives = 32/47 (68%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237 P FL S+ GK V+VKL G +Y+G+L DGYMN+ + TEE V+G Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNG 61 >At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6 snRNA-associated Sm-like protein LSm6 [Mus musculus] Length = 91 Score = 52.4 bits (120), Expect = 2e-07 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDG 237 P FL S+ G+ V+VKL G +Y+G L DGYMN+ + TEE V+G Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNG 61 >At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein LSm4 [Mus musculus] Length = 129 Score = 33.1 bits (72), Expect = 0.13 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +1 Query: 97 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 210 P L + G +LV+LK G Y G LV+ D +MN+ L Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40 >At1g35850.1 68414.m04454 pumilio/Puf RNA-binding domain-containing protein contains Pfam profile: PF00806: Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain) Length = 304 Score = 28.3 bits (60), Expect = 3.6 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 172 LLVSTDGYMNLQLANTEELVDGTCTGNL 255 LL+S D Y N + + +L D CTGN+ Sbjct: 168 LLLSNDAYGNFVVQHVLKLHDSRCTGNI 195 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,394,147 Number of Sequences: 28952 Number of extensions: 156030 Number of successful extensions: 297 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 292 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 297 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1033331880 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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