Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20959
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   1.9  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    27   2.5  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   3.4  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   7.8  

>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 413  FRKWPKSTRKRLSLD-KAEQSTNSVCRRTRPILYIWKKTERHDIFANKARLEKKKYTL 583
            + K PKS+    SLD  AEQ +   C  T PI++  +   +  +F N    E K+  L
Sbjct: 1087 YLKDPKSSNGISSLDFVAEQISLLRCSTTLPIIFTIRTISQGGLFPNDKEEEAKELML 1144


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 515 WKKTERHDIFANKARLEKKKYTLHPGHTDYMDRFLEEQEASGGSVVR 655
           W K E  +I     R E  +Y    G+  +++++L E+E    S+++
Sbjct: 58  WDKPETENISDLDERSEMVRYLRASGYAKFLEKYLIEEELPVRSILK 104


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 216 HAKSVCSEFRHRDELIPKGKQLRDDEEALYLL 311
           HA  +C ++ + DEL+    ++ +++EAL L+
Sbjct: 646 HAAQICKQYNYLDELVYILGRMGNNKEALMLI 677


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 593 HTDYMDRFLEEQEASGGSVVRPASPSPMM 679
           HTD+ +RF++        V R +SP  MM
Sbjct: 199 HTDFTNRFVDSDFDPDSGVGRSSSPDQMM 227


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 321 HIVAISTGPLHHHEAVFLLELIHP 250
           HI+ I TG L+H     L E + P
Sbjct: 8   HIIVIQTGSLYHRATFGLAESLEP 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,871
Number of Sequences: 5004
Number of extensions: 63645
Number of successful extensions: 189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)