Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20959
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367... 41 0.001
03_03_0085 - 14341047-14341258,14343783-14343858,14344691-14344777 31 0.86
01_01_0278 - 2281536-2281977,2282523-2282926 31 1.1
10_08_0932 - 21655487-21655648,21655730-21655777,21655912-216559... 30 2.0
06_01_0243 - 1837830-1837886,1837969-1838016,1838113-1838255,183... 30 2.0
04_04_0260 + 23996775-23996865,23997031-23997566,23998407-239988... 30 2.0
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 30 2.0
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 29 3.5
02_03_0384 + 18389895-18390439,18392056-18392341 29 3.5
01_06_1435 + 37351653-37351990,37352241-37352424 29 4.6
06_01_0512 - 3695109-3695523,3696318-3696868 28 6.0
02_02_0089 - 6668179-6668316,6668386-6668565,6668648-6668729,666... 28 6.0
03_05_0502 + 24947444-24947665,24947768-24947823,24947929-249480... 28 8.0
01_06_1376 - 36757458-36757923,36758040-36758473 28 8.0
>03_02_0983 -
12933082-12934884,12935669-12936487,12936754-12936795,
12937116-12937244
Length = 930
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Frame = +3
Query: 252 DELIPKGKQLRDDEEALYLLQQCGHNAEEALRRKRISAQTPP----HASLWSEEECRNFE 419
D+++ Q DD+ A Q+ + ++A+ + Q P S+WS++E
Sbjct: 185 DQIVSDSHQAHDDKLAPCSTQEGLNFTDKAMADQGEIEQFIPVPNSSTSIWSDQEAELLL 244
Query: 420 NGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKKLKGMIYLQIKLDWRRKSILCIL 590
GL GK+ H++ V +++VG+++ +Y +GK KG Y + + K CIL
Sbjct: 245 LGLYIFGKNLHVL-SRFVGSKTVGDVLSYY-YGKFYKGEAYKRWSACRKAKIRRCIL 299
>03_03_0085 - 14341047-14341258,14343783-14343858,14344691-14344777
Length = 124
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 312 QQCGHNAEEALRRKRISAQTPPHASLWSEEECRNFENGLKAHGKD 446
Q CG N E+A++RK S + + S EE G+K GK+
Sbjct: 63 QNCGKNNEKAVKRKAPSPDSGSNEGNTSAEEQNKNSTGVKKGGKE 107
>01_01_0278 - 2281536-2281977,2282523-2282926
Length = 281
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGK-DFHLIRQNKVRTRS 485
W+EEE + F GLK +GK D+ I +N V+TR+
Sbjct: 129 WTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRT 161
>10_08_0932 -
21655487-21655648,21655730-21655777,21655912-21655986,
21656072-21656292,21656687-21656978
Length = 265
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 345 RRKRISAQTPPHASLWSEEECRNFENGLKAHGK-DFHLIRQNKVRTRSVGEL 497
+R+R Q W+EEE + F GL+ GK D+ I +N V +R+ ++
Sbjct: 86 KRRRRKVQERKKGVPWTEEEHKKFLEGLRQLGKGDWRGISKNFVTSRTATQV 137
>06_01_0243 -
1837830-1837886,1837969-1838016,1838113-1838255,
1838784-1838982,1839085-1839265,1839857-1840228,
1841453-1841658
Length = 401
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 386 SLVRRRMPKFRKWPKSTRKRLSLDKAEQSTNSVCRRTRPILYIWKKTERHDIFANKA 556
S V R + K WP TRK+ S +A Q+ + R+ +L + K + HD+ + A
Sbjct: 201 SPVERMIQKSLYWPDGTRKKYSRSQASQNVDKRRRQMVQVL-LDKYNDDHDLVEDLA 256
>04_04_0260 +
23996775-23996865,23997031-23997566,23998407-23998892,
23998989-23999152,23999220-23999281,23999753-23999907,
24000625-24000738,24001701-24002233,24002512-24002609,
24003108-24003398,24003764-24003830,24003905-24003983
Length = 891
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +3
Query: 381 ASLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYI---FGKKLKGMI 539
+S W++ E G+ HG D+ LI Q+ VRT++ E + I FG+ + G +
Sbjct: 244 SSAWTDAETLLLLEGVLKHGDDWDLIAQH-VRTKNKSECIARLIQLPFGEHMLGTV 298
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYI-FGKKLKGMIYLQIKLD 560
W+ +E +NF N L+ GK+F I +V+++S ++ +Y +++K ++ + LD
Sbjct: 15 WTRQEEQNFFNALRQVGKNFEKITL-RVQSKSKDQVRHYYYRLVRRMKKLLGPEFSLD 71
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 360 SAQTPPHA-SLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYI-FGKKLKG 533
SA+ P + W+ +E ++F N L+ GK+F I +V++++ ++ +Y +++K
Sbjct: 114 SAEKPTRQWAAWTRQEEQSFFNALRLEGKNFEKITL-RVQSKNKDQVRHYYYRLVRRMKK 172
Query: 534 MIYLQIKLD 560
++ + LD
Sbjct: 173 LLGPEFSLD 181
>02_03_0384 + 18389895-18390439,18392056-18392341
Length = 276
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 345 RRKRISAQTP-PHASLWSEEECRNFENGLKAHGK-DFHLIRQNKVRTRSVGELVQFY 509
R+ R++ P A +W+ EE F +G+ +GK ++ + V+T+S ++ Y
Sbjct: 160 RKTRMAGGGPRKKAEMWTREEHSQFLHGISTYGKGNWKALASEFVKTKSSTQIASHY 216
>01_06_1435 + 37351653-37351990,37352241-37352424
Length = 173
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGK-DFHLIRQNKVRTRS 485
WSE+E R F GL +G+ D+ I + VRTR+
Sbjct: 107 WSEDEHRLFLEGLDRYGRGDWRNISRFSVRTRT 139
>06_01_0512 - 3695109-3695523,3696318-3696868
Length = 321
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 387 LWSEEECRNFENGLKAHGK-DFHLIRQNKVRTRSVGEL 497
+W+EEE R F GL+ G+ D+ I ++ V TR+ ++
Sbjct: 177 IWTEEEHRLFMVGLRVFGRGDWKNISKHLVTTRTAAQV 214
>02_02_0089 -
6668179-6668316,6668386-6668565,6668648-6668729,
6669317-6669405,6669503-6669580,6670502-6670559,
6670727-6670956,6671174-6671318,6671417-6671458,
6671681-6671853
Length = 404
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 243 RHRDELIPKGKQLRDDEEALYLLQQCGHNAEEALR 347
RH + +P+ K+L DE + LL GH +E L+
Sbjct: 140 RH-ESAVPRSKRLLSDEGSHILLYMTGHGGDEFLK 173
>03_05_0502 +
24947444-24947665,24947768-24947823,24947929-24948099,
24948508-24948631,24949086-24949142,24949216-24949312,
24949619-24949826,24950637-24950697,24950793-24950846
Length = 349
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 380 RKSLVRRRMPKFRKWPKSTRKRLSLDKAEQSTNSVCRRTR 499
R L RRR P R P R+RL L A S++S TR
Sbjct: 20 RLLLSRRRSPASRSPPPPLRRRLPLLAASMSSSSSTAATR 59
>01_06_1376 - 36757458-36757923,36758040-36758473
Length = 299
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 342 LRRKRISAQTPPHASLWSEEECRNFENGLKAHGK-DFHLIRQNKVRTRS 485
L+R R Q W+EEE ++F GLK +G+ D+ I + V +R+
Sbjct: 123 LKRGRAPDQERKKGVPWTEEEHKSFLMGLKKYGRGDWRNISRYFVTSRT 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,311,529
Number of Sequences: 37544
Number of extensions: 403851
Number of successful extensions: 1231
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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